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This repository was archived by the owner on Jan 21, 2021. It is now read-only.

Releases: DeepPhe/ontologies

Sprint 19.0

08 Feb 12:42

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-Ran script to clean up synonymy
-Added children to tumor class (e.g. BreastPrimaryTumor, BreastRegionalTumor, BreastDistantTumor)
-Added axioms to "upgrade" a generic disease (i.e. Carcinoma) to a more specific disease (i.e. Breast Carcinoma)
-Added synonyms for several different classes

Sprint 18

20 Dec 15:28

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-Made deletions and editions to section classes for better section detection in both Extended Dev Set and SEER set.

Sprint 16.0

11 Oct 13:24

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  • Added preferredTerms to all classes and properties to be used in visualization.
  • Added draft representation for treatment regimens
  • Added some synonyms

Sprint 14.0

19 Sep 12:21

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-Created representation for radiologic tumor size, pathologic tumor size and aggregate pathologic tumor size.
-Created representation for Oncotype Dx score
-Created representation for calcifications
-Created representation for margin status
-Fixed representation for BIRADS
-Added "abnormal enhancement" as synonym for lesion

Sprint 13.0

03 Aug 19:25

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-Added new disease hierarchy to nlpCancer.owl
-Created anatomicSite.owl to better control synonyms and body sites extracted from NLP system
-Added diagnostic tumor size and radiologic tumor size to nlpBreastCancer.owl
-Added oncotype class to nlpBreastCancer.owl

Sprint 11.0

21 Jun 13:18

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  • Removed metastasis class and moved all of its children classes under Disease/Disorder to help with double annotation at mention level.
  • Fixed TNM URIs.
  • Cleaned up synonyms for terms used for demo.

Sprint 10.0

03 May 13:19

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  • Added clock face positions as Body Site Modifier
  • Added quadrant position as Body Site Modifier
  • Moved Gene Mutations under Observation
  • Fixed CUIs on all classes to represent Metathesaurus

Sprint 9.1

15 Mar 13:59

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Final changes to the model for Sprint 9. Also, the TCGA mapping file has been added to the repository.

Sprint 9.0 Release

01 Mar 14:43

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All of the changes made for sprint 9.

Sprint 8.0 Release

08 Feb 22:18

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*Added procedures and medications to breast cancer model.
*Restructured nlp files.
*Added updated Schema and TermMapping local files.