updates to CI jobs

.github/workflows/httomo_pypi_publish.yml

@@ -16,11 +16,11 @@ jobs:
     permissions:
       id-token: write
     steps:
-      - uses: actions/checkout@v4
-      - name: Set up Python
+      - uses: actions/checkout@v5
+      - name: Set up Python 3.12
         uses: actions/setup-python@v4
         with:
-          python-version: "3.11"
+          python-version: "3.12"
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip

.github/workflows/lint.yml

@@ -14,5 +14,10 @@ jobs:
     steps:
       - name: Checkout repository code
         uses: actions/checkout@v5
+
+      - name: Setup Python 3.12
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.12'
       - name: Run black
         uses: psf/black@stable

.github/workflows/tests_httomo.yml

@@ -17,7 +17,7 @@ jobs:
         shell: bash -l {0}
     steps:
       - name: Checkout repository code
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: Create conda environment
         uses: mamba-org/setup-micromamba@v2

httomo/transform_layer.py

@@ -57,7 +57,7 @@ def insert_save_methods(self, pipeline: Pipeline) -> Pipeline:
             methods.append(m)
             if (
                 (m.save_result or self._save_all)
-                and m.method_name not in ["save_to_images", "data_checker"]                
+                and m.method_name not in ["save_to_images", "data_checker"]
                 and "center" not in m.method_name
             ):
                 methods.append(

tests/test_transform_layer.py

@@ -54,7 +54,9 @@ def test_insert_save_methods_save_all(mocker: MockerFixture, tmp_path: Path):
     assert pipeline[3].task_id == "save_t2"
 
 
-@pytest.mark.parametrize("method_name", ["save_to_images", "find_center_vo", "data_checker"])
+@pytest.mark.parametrize(
+    "method_name", ["save_to_images", "find_center_vo", "data_checker"]
+)
 def test_insert_save_methods_does_not_save_for_some_methods(
     mocker: MockerFixture, method_name: str, tmp_path: Path
 ):