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deps(python): bump the all-dependencies group with 5 updates - #172

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deps(python): bump the all-dependencies group with 5 updates#172
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dependabot/uv/dev/all-dependencies-18db2455aa

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Bumps the all-dependencies group with 5 updates:

Package From To
mypy 2.3.0 2.3.1
ruff 0.16.1 0.16.5
nbformat 5.10.4 5.11.1
numpy 2.5.1 2.5.2
plotly 6.9.0 7.0.0

Updates mypy from 2.3.0 to 2.3.1

Changelog

Sourced from mypy's changelog.

Mypy 2.3.1

  • Fix mypyc crash on double yielding Iterators (Daniël van Noord, PR 21826)
  • Fix mypyc default_factory for inherited dataclass (Daniël van Noord, PR 21785)
  • Clear mypyc coroutine env on coroutine completion (Piotr Sawicki, PR 21734)
  • Fix crash when unpacking return value from overload (Shantanu, PR 21830)

Acknowledgements

Thanks to all mypy contributors who contributed to this release:

  • Agriya Khetarpal
  • Ethan Sarp
  • Ivan Levkivskyi
  • Jingchen Ye
  • Jukka Lehtosalo
  • Piotr Sawicki
  • Shantanu
  • Tom Bannink
  • Viktor Szépe
  • ygale

I'd also like to thank my employer, Dropbox, for supporting mypy development.

Mypy 2.2

We've just uploaded mypy 2.2.0 to the Python Package Index (PyPI). Mypy is a static type checker for Python. This release includes new features, performance improvements and bug fixes. You can install it as follows:

python3 -m pip install -U mypy

You can read the full documentation for this release on Read the Docs.

Support for Closed TypedDicts (PEP 728)

Mypy now supports closed TypedDicts as specified in PEP 728. A closed TypedDict cannot have extra keys beyond those explicitly defined. This allows the type checker to determine that certain operations are safe when they otherwise wouldn't be due to the potential presence of unknown keys.

You can use the closed keyword argument with TypedDict:

HasName = TypedDict("HasName", {"name": str})
HasOnlyName = TypedDict("HasOnlyName", {"name": str}, closed=True)
Movie = TypedDict("Movie", {"name": str, "year": int})
movie: Movie = {"name": "Nimona", "year": 2023}
has_name: HasName = movie  # OK: HasName is open (default)
has_only_name: HasOnlyName = movie  # Error: HasOnlyName is closed and Movie has extra "year" key
</tr></table>

... (truncated)

Commits

Updates ruff from 0.16.1 to 0.16.5

Release notes

Sourced from ruff's releases.

0.16.5

Release Notes

Released on 2026-08-27.

Preview features

  • Allow rules without codes (#28049)
  • Introduce category selectors (#27666)
  • Update preview default rules and categories (#27877)

Bug fixes

  • [flake8-async] Detect blocking generic HTTP requests (ASYNC210) (#28024)
  • [flake8-datetimez] Allow timezone-safe strptime chains (DTZ007) (#28023)
  • [flake8-simplify] Respect side effects in lambda defaults (SIM401) (#28000)

Server

  • Fix duplicated "of" in ClientOptions doc comment (#27978)

Documentation

  • Document rule acceptance guidelines (#27910)
  • Document the new category selectors (#27906)

Contributors

Install ruff 0.16.5

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.16.5/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://releases.astral.sh/github/ruff/releases/download/0.16.5/ruff-installer.ps1 | iex"

Download ruff 0.16.5

... (truncated)

Changelog

Sourced from ruff's changelog.

0.16.5

Released on 2026-08-27.

Preview features

  • Allow rules without codes (#28049)
  • Introduce category selectors (#27666)
  • Update preview default rules and categories (#27877)

Bug fixes

  • [flake8-async] Detect blocking generic HTTP requests (ASYNC210) (#28024)
  • [flake8-datetimez] Allow timezone-safe strptime chains (DTZ007) (#28023)
  • [flake8-simplify] Respect side effects in lambda defaults (SIM401) (#28000)

Server

  • Fix duplicated "of" in ClientOptions doc comment (#27978)

Documentation

  • Document rule acceptance guidelines (#27910)
  • Document the new category selectors (#27906)

Contributors

0.16.4

Released on 2026-08-20.

Preview features

  • [flake8-use-pathlib] Add autofix for PTH116 (#26460)
  • [refurb] Restrict delete-full-slice to lists (FURB131) (#27711)
  • [refurb] Skip FURB101 and FURB103 when the open argument is a file descriptor (#27643)

Bug fixes

  • Fix InvalidInstruction on Windows CPUs that do not support POPCNT (#27803)
  • [pyflakes] Emit semantic syntax errors in string type definitions as F722 (#27835)
  • [pylint] Allow os._exit imports in import-private-name (PLC2701) (#27738)

... (truncated)

Commits

Updates nbformat from 5.10.4 to 5.11.1

Release notes

Sourced from nbformat's releases.

v5.11.1

5.11.1

(Full Changelog)

Merged PRs

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

@​aryansk (activity) | @​Carreau (activity)

v5.11.0

5.11.0

(Full Changelog)

PendingDeprecation

NotebookNotary's stores are regularly note .close()d, so we introduce the ability to use it at a context manger once, (as .store is opened on creation) and are now emitting a PendingDeprecationWarning to indicate or wish to move to a context manager API and avoid resouce leaking. Again this is a PendingDeprecationWarning, please let us know if the current context manager API is problematic.

Enhancements made

Maintenance and upkeep improvements

... (truncated)

Changelog

Sourced from nbformat's changelog.

5.11.1

(Full Changelog)

Merged PRs

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

@​aryansk (activity) | @​Carreau (activity)

5.11.0

(Full Changelog)

Enhancements made

Maintenance and upkeep improvements

Documentation improvements

... (truncated)

Commits
  • 75f819f Publish 5.11.1
  • 4db76de Bump github/codeql-action from 4.37.3 to 4.37.5 in the actions group
  • 3eca403 Try to skip publishing to NPM to be able to publish a patch version on
  • d2c5d33 disable pendingdeprecationWarnings for now
  • 003ea2c fix steps to skip
  • 2e1272b style: pre-commit fixes
  • 0bd4ebe Clarify normalize guidance in the changelog
  • 8e973f5 Publish 5.11.0
  • 434f6ca chore: update pre-commit hooks
  • 813fcfe Remove deprecated repair_duplicate_cell_ids/strip_invalid_metadata kwargs fro...
  • Additional commits viewable in compare view

Updates numpy from 2.5.1 to 2.5.2

Release notes

Sourced from numpy's releases.

v2.5.2 (Aug 9, 2026)

NumPy 2.5.2 Release Notes

The NumPy 2.5.2 is a patch release that fixes bugs discovered after the 2.5.1 release. The big news is that it includes wheels for the newly released Python 3.15.0rc1.

This release supports Python versions 3.12-3.15

C API changes

PyArray_StringDTypeObject is opaque under the abi3t stable ABI

The PyArray_StringDTypeObject was accidentally exposed in NumPy 2.5 when targeting the free-threading-compatible stable ABI (Py_TARGET_ABI3T). PyArray_StringDTypeObject is now an opaque struct: extensions compiled that way cannot access its fields, since the struct layout depends on the size of the object header. Any code that accessed PyArray_StringDTypeObject fields in an abi3t build would have crashed, so we are making this API change in a bugfix release.

The NpyString allocator API remains usable by passing the descriptor object pointer, e.g. NpyString_acquire_allocator((PyArray_StringDTypeObject *)descr).

(gh-31771)

Contributors

A total of 16 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Abhijeetsingh Meena +
  • Charalampos Stratakis
  • Charles Harris
  • Chris Ninham +
  • David Woods
  • Geonho +
  • Gopu Yeshwanth Reddy +
  • Iason Krommydas
  • Ijtihed Kilani
  • Jelle Zijlstra +
  • Joren Hammudoglu
  • Kumar Aditya
  • Mike Boyle
  • Nathan Goldbaum
  • Raghuveer Devulapalli
  • Sebastian Berg

... (truncated)

Commits
  • 48fecee REL: Prepare for the NumPy 2.5.2 release (#32226)
  • ecf599c Merge pull request #32221 from charris/backport-32151
  • 3c7ac97 Merge pull request #32220 from charris/backport-32205
  • 23b30f4 BUG: avoid segfaults when legacy copyswap slot is not defined (#32151)
  • 4964ca8 TYP: isclose shape-typing fix for 2d array-likes (#32205)
  • c37ed94 MAINT: Skip limited_api tests on some platforms. (#32214)
  • 5cfd73b Merge pull request #32206 from charris/update-cibuildwheel
  • d8262bc MAINT: Update cibuildwheel to v4.2.0
  • 988d94d Merge pull request #32158 from charris/backport-32133
  • b2e4f97 BUG: avoid possible stack overflow in arraydescr_dealloc (#32133)
  • Additional commits viewable in compare view

Updates plotly from 6.9.0 to 7.0.0

Release notes

Sourced from plotly's releases.

v7.0.0

Fixed

  • Fix hex_to_rgb parsing of 3-digit shorthand hexadecimal colors such as #FFF [#5662], with thanks to @​genrichez for the contribution!
  • Improve px.*_map() auto-fitting behavior when zoom and center are not specified [#5686]
  • Add <!doctype html> to the to_html() template to comply with modern web standards [#5693], with thanks to @​mishrakushal for the contribution!
  • Apply histfunc/z aggregation to marginal_x/marginal_y="histogram" subplots in density_heatmap/density_contour, instead of always showing raw bin counts [#3521], with thanks to @​lucasjamar for the contribution!
  • Fix mpl_to_plotly silently dropping matplotlib path collections in data coordinates (such as violin plots, pcolor, event plots, stack plots, fill_between, and stem plots) by rendering them as filled polygons or lines [#5702], with thanks to @​robertoffmoura for the contribution!

Removed

  • Remove the deprecated Figure Factory functions create_2d_density, create_annotated_heatmap, create_bullet, create_candlestick, create_choropleth, create_distplot, create_facet_grid, create_gantt, create_hexbin_mapbox, create_ohlc, create_scatterplotmatrix, and create_violin [#5627]
  • Remove support for Kaleido versions less than v1.0.0 for static image generation [#5677]
  • Remove support for Orca for static image generation [#5677]
  • Remove engine argument from functions fig.write_image(),fig.to_image(), pio.write_image(), pio.write_images(), pio.to_image(), pio.full_figure_for_development(), and from renderer constructors [#5677]

Updated

  • Update plotly.js from version 3.6.0 to version 4.0.0 [#5673]. This is a major-version release with many changes. See the plotly.js release notes for the full list. The most significant changes include:
    • Add quiver trace type to visualize vector fields using arrows [#7710, #7945]
    • Add "Share Chart" modebar button for generating a chart-sharing link via Plotly Cloud [#7909]
    • Remove scattermapbox, choroplethmapbox, densitymapbox trace types, the mapbox subplot, and the mapboxAccessToken config option [#7860]. Use the equivalent *map traces instead.
      • The corresponding graph_objects and Plotly Express functions have also been removed in plotly.py; use the map versions instead
    • Drop support for MathJax v2, and add support for v4 [#7898]. MathJax is the JavaScript library used for rendering mathematical equations in plotly charts.
    • Switch color processing library from TinyColor to culori [#7536, #7962]. There are some changes to supported color string formats as a result:
      • rgb()/rgba() strings with decimal 0–1 fractions are no longer supported
      • hsv() color strings are no longer supported
      • Strings with invalid syntax such as hsl(120, 50% 50%) are no longer supported
      • New supported formats: '#ff0000aa', '#f00a', 'rgb(255 0 0)', 'rgba(255 0 0 / 0.5)', 'hsl(0 100% 50% / 0.5)', 'hsla(0, 100%, 50%, 0.5)', 'hwb(0, 0%, 0%)', lab(), lch(), oklab(), oklch(), color(), hsl(0.5turn 60% 40%), hsl(none 60% 40%)
    • Replace country-regex with country-iso-search to search for country names in choropleth, scattergeo traces [#7856]. Most country names are handled exactly the same; a small number of legacy entries have been removed.
    • Change layout.geo.fitbounds default from false to 'locations' [#7895]. geo subplots will now auto-fit the initial view to the trace data by default.
    • Dynamically compute center and zoom values for scattermap and densitymap traces. The initial map view will now auto-fit to the trace data by default. Add layout.map.fitbounds attribute (default 'locations') to enable or disable auto-fitting behavior [#7884, #7913]
    • Fix GeoJSON bounding-box computation for choropleth and scattergeo traces whose geometry crosses the antimeridian [#7891]

v7.0.0rc0

Removed

  • Remove the deprecated Figure Factory functions create_2d_density, create_annotated_heatmap, create_bullet, create_candlestick, create_choropleth, create_distplot, create_facet_grid, create_gantt, create_hexbin_mapbox, create_ohlc, create_scatterplotmatrix, and create_violin [#5627]
  • Remove support for Kaleido versions less than v1.0.0 for static image generation [#5677]
  • Remove support for Orca for static image generation [#5677]
  • Remove engine argument from functions fig.write_image(),fig.to_image(), pio.write_image(), pio.write_images(), pio.to_image(), pio.full_figure_for_development(), and from renderer constructors [#5677]

Fixed

  • Raise a clear ValueError when an unsupported marginal plot type is passed to Plotly Express, instead of failing later with a cryptic 'NoneType' object has no attribute 'constructor' message [#5625], with thanks to @​eugen-goebel for the contribution!

Updated

  • Update plotly.js from version 3.6.0 to version 4.0.0-rc.0 [#5673]. This is a major-version release candidate with many changes. See the plotly.js release notes for the full list. The most significant changes include:
    • Add quiver trace type to visualize vector fields using arrows [#7710], with thanks to @​degzhaus for the contribution!
    • Add "Share Chart" modebar button for generating a chart-sharing link via Plotly Cloud [#7909]
    • Remove scattermapbox, choroplethmapbox, densitymapbox trace types, the mapbox subplot, and the mapboxAccessToken config option [#7860]. Use the equivalent *map traces instead.
      • The corresponding graph_objects and Plotly Express functions have also been removed in plotly.py; use the map versions instead
    • Drop support for MathJax v2, and add support for v4 [#7898]. MathJax is the JavaScript library used for rendering mathematical equations in plotly charts.
    • Switch color processing library from TinyColor to color [#7536]. There are some changes to supported color string formats as a result:
      • rgb()/rgba() strings with decimal 0–1 fractions are no longer supported

... (truncated)

Changelog

Sourced from plotly's changelog.

[7.0.0] - 2026-08-25

Fixed

  • Fix hex_to_rgb parsing of 3-digit shorthand hexadecimal colors such as #FFF [#5662], with thanks to @​genrichez for the contribution!
  • Improve px.*_map() auto-fitting behavior when zoom and center are not specified [#5686]
  • Add <!doctype html> to the to_html() template to comply with modern web standards [#5693], with thanks to @​mishrakushal for the contribution!
  • Apply histfunc/z aggregation to marginal_x/marginal_y="histogram" subplots in density_heatmap/density_contour, instead of always showing raw bin counts [#3521], with thanks to @​lucasjamar for the contribution!
  • Fix mpl_to_plotly silently dropping matplotlib path collections in data coordinates (such as violin plots, pcolor, event plots, stack plots, fill_between, and stem plots) by rendering them as filled polygons or lines [#5702], with thanks to @​robertoffmoura for the contribution!

Updated

  • Update plotly.js from version 3.6.0 to version 4.0.0 [#5673]. This is a major-version release with many changes. See the plotly.js release notes for the full list. The most significant changes include:
    • Add quiver trace type to visualize vector fields using arrows [#7710, #7945]
    • Add "Share Chart" modebar button for generating a chart-sharing link via Plotly Cloud [#7909]
    • Remove scattermapbox, choroplethmapbox, densitymapbox trace types, the mapbox subplot, and the mapboxAccessToken config option [#7860]. Use the equivalent *map traces instead.
      • The corresponding graph_objects and Plotly Express functions have also been removed in plotly.py; use the map versions instead
    • Drop support for MathJax v2, and add support for v4 [#7898]. MathJax is the JavaScript library used for rendering mathematical equations in plotly charts.
    • Switch color processing library from TinyColor to culori [#7536, #7962]. There are some changes to supported color string formats as a result:
      • rgb()/rgba() strings with decimal 0–1 fractions are no longer supported
      • hsv() color strings are no longer supported
      • Strings with invalid syntax such as hsl(120, 50% 50%) are no longer supported
      • New supported formats: '#ff0000aa', '#f00a', 'rgb(255 0 0)', 'rgba(255 0 0 / 0.5)', 'hsl(0 100% 50% / 0.5)', 'hsla(0, 100%, 50%, 0.5)', 'hwb(0 0% 0%)', lab(), lch(), oklab(), oklch(), color(), hsl(0.5turn 60% 40%), hsl(none 60% 40%)
    • Replace country-regex with country-iso-search to search for country names in choropleth, scattergeo traces [#7856]. Most country names are handled exactly the same; a small number of legacy entries have been removed.
    • Change layout.geo.fitbounds default from false to 'locations' [#7895]. geo subplots will now auto-fit the initial view to the trace data by default.
    • Dynamically compute center and zoom values for scattermap and densitymap traces. The initial map view will now auto-fit to the trace data by default. Add layout.map.fitbounds attribute (default 'locations') to enable or disable auto-fitting behavior [#7884, #7913]
    • Fix GeoJSON bounding-box computation for choropleth and scattergeo traces whose geometry crosses the antimeridian [#7891]

[7.0.0rc0] - 2026-07-29

Removed

  • Remove the deprecated Figure Factory functions create_2d_density, create_annotated_heatmap, create_bullet, create_candlestick, create_choropleth, create_distplot, create_facet_grid, create_gantt, create_hexbin_mapbox, create_ohlc, create_scatterplotmatrix, and create_violin [#5627]
  • Remove support for Kaleido versions less than v1.0.0 for static image generation [#5677]
  • Remove support for Orca for static image generation [#5677]
  • Remove engine argument from functions fig.write_image(),fig.to_image(), pio.write_image(), pio.write_images(), pio.to_image(), pio.full_figure_for_development(), and from renderer constructors [#5677]

Updated

  • Update plotly.js from version 3.6.0 to version 4.0.0-rc.0 [#5673]. This is a major-version release candidate with many changes. See the plotly.js release notes for the full list. The most significant changes include:
    • Add quiver trace type to visualize vector fields using arrows [#7710]
    • Add "Share Chart" modebar button for generating a chart-sharing link via Plotly Cloud [#7909]
    • Remove scattermapbox, choroplethmapbox, densitymapbox trace types, the mapbox subplot, and the mapboxAccessToken config option [#7860]. Use the equivalent *map traces instead.
      • The corresponding graph_objects and Plotly Express functions have also been removed in plotly.py; use the map versions instead
    • Drop support for MathJax v2, and add support for v4 [#7898]. MathJax is the JavaScript library used for rendering mathematical equations in plotly charts.
    • Switch color processing library from TinyColor to color [#7536]. There are some changes to supported color string formats as a result:
      • rgb()/rgba() strings with decimal 0–1 fractions are no longer supported
      • hsv() color strings are no longer supported
      • New supported formats: '#ff0000aa', '#f00a', 'rgb(255 0 0)', 'rgba(255 0 0 / 0.5)', 'hsl(0 100% 50% / 0.5)', 'hsla(0, 100%, 50%, 0.5)', 'hwb(0, 0%, 0%)'
    • Replace country-regex with country-iso-search to search for country names in choropleth, scattergeo traces [#7856]. Most country names are handled exactly the same; a small number of legacy entries have been removed.
    • Change layout.geo.fitbounds default from false to 'locations' [#7895]. geo subplots will now auto-fit the initial view to the trace data by default.
    • Dynamically compute center and zoom values for scattermap and densitymap traces. The initial map view will now auto-fit to the trace data by default. Add layout.map.fitbounds attribute (default 'locations') to enable or disable auto-fitting behavior [#7884, #7913]
    • Fix GeoJSON bounding-box computation for choropleth and scattergeo traces whose geometry crosses the antimeridian [#7891]
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@dependabot
deps(python): bump the all-dependencies group with 5 updates
21870c7 
Bumps the all-dependencies group with 5 updates:

| Package | From | To |
| --- | --- | --- |
| [mypy](https://github.com/python/mypy) | `2.3.0` | `2.3.1` |
| [ruff](https://github.com/astral-sh/ruff) | `0.16.1` | `0.16.5` |
| [nbformat](https://github.com/jupyter/nbformat) | `5.10.4` | `5.11.1` |
| [numpy](https://github.com/numpy/numpy) | `2.5.1` | `2.5.2` |
| [plotly](https://github.com/plotly/plotly.py) | `6.9.0` | `7.0.0` |


Updates `mypy` from 2.3.0 to 2.3.1
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v2.3.0...v2.3.1)

Updates `ruff` from 0.16.1 to 0.16.5
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.16.1...0.16.5)

Updates `nbformat` from 5.10.4 to 5.11.1
- [Release notes](https://github.com/jupyter/nbformat/releases)
- [Changelog](https://github.com/jupyter/nbformat/blob/main/CHANGELOG.md)
- [Commits](jupyter/nbformat@v5.10.4...v5.11.1)

Updates `numpy` from 2.5.1 to 2.5.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.5.1...v2.5.2)

Updates `plotly` from 6.9.0 to 7.0.0
- [Release notes](https://github.com/plotly/plotly.py/releases)
- [Changelog](https://github.com/plotly/plotly.py/blob/main/CHANGELOG.md)
- [Commits](plotly/plotly.py@v6.9.0...v7.0.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-version: 2.3.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: ruff
  dependency-version: 0.16.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: nbformat
  dependency-version: 5.11.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: numpy
  dependency-version: 2.5.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: plotly
  dependency-version: 7.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: all-dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added 🐍 python Pull requests that update Python code 📦 dependencies Pull requests that update a dependency file labels Sep 1, 2026
@Dyl-M
Dyl-M merged commit 1b9e2a3 into dev Sep 1, 2026
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@dependabot
dependabot Bot deleted the dependabot/uv/dev/all-dependencies-18db2455aa branch September 1, 2026 09:19
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