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71 changes: 0 additions & 71 deletions advanced_topics/env_mgmt.md

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182 changes: 182 additions & 0 deletions advanced_topics/environments/binder_for_images.md
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# GeoLab Binder

There are two ways to launch a custom environment in GeoLab. The first is to build a Docker image, push it to a registry, and paste the image URL. The second, called **GeoLab Binder**, is to point GeoLab at a GitHub repository and let it build the environment for you. This guide covers how the second approach works and when to use it.

---

## What Is GeoLab Binder?

GeoLab Binder lets you launch a session from a GitHub repository instead of a prebuilt image. You put configuration files in your repo that describe what packages you need, and GeoLab builds the environment automatically when you start a session.

Behind the scenes, GeoLab reads the Dockerfile and configuration files in your repository and builds the container image for you. You write the Dockerfile (using the same template as a custom image), but you never run Docker locally or push to a registry, as GeoLab handles the build.

Both approaches run inside GeoLab, so you have the same access to EarthScope data services either way.

```text
GitHub repo with config files → GeoLab builds image → Session launches in GeoLab
```

---

## GeoLab Binder vs. Custom Image

Both approaches use GeoLab's environment selector, but they use different options. The difference is what you select and what you paste.

| | **GeoLab Binder** | **Custom Image** |
| --- | --- | --- |
| Menu option | **Build your own image** | **Other** |
| What you paste | A GitHub repo URL | A container registry URL (`ghcr.io/...`) |
| Who builds the image | GeoLab, automatically from your repo | You, locally with Docker |
| What you need | Dockerfile + config files in a GitHub repo | Docker Desktop, local build, registry push |
| EarthScope data access | Yes | Yes |
| How updates work | Push a commit, and the next launch picks up the changes | Rebuild and push a new image tag |
| Best for | Getting started quickly, iterating, sharing a repo | Stable, versioned environments; full Docker control |

**Use GeoLab Binder when** you want to share a GitHub repository as a runnable environment without running Docker locally or managing a container registry.

**Use a custom image when** you need a fixed, versioned environment that won't change between sessions, or when you need more control than config files allow. See [Building a Custom GeoLab Image](./building-custom-images.md).

---

## Before You Start

You need:

- A **GitHub account** and a **GitHub repository** for your project.
- A GeoLab account at [GeoLab](https://geolab.earthscope.cloud).

No local Docker builds or container registry required.

---

## Step 1: Set Up Your GitHub Repository

Create a new repository on GitHub (or use an existing one). Add your notebooks and at least one configuration file:

```text
my-project/
├── Dockerfile ← required (copy from the geolab-base template)
├── environment.yml ← your packages (conda)
├── requirements.txt ← PyPI-only packages (optional)
├── apt.txt ← system software (optional, rarely needed)
├── postBuild ← setup commands to run after install (optional)
└── my_notebook.ipynb ← your notebooks
```

Copy the `Dockerfile` from the `geolab-base` template at [EarthScope/GeoLab](https://github.com/EarthScope/GeoLab/tree/main/geolab-base) and leave it unchanged. All your customization goes in the other files. GeoLab Binder reads everything in the repo and builds the image when you launch.

---

## Step 2: Write Your Configuration Files

### `environment.yml`: Your Main Package List

```yaml
name: my-binder-env
channels:
- conda-forge
dependencies:
- python=3.11
- numpy
- matplotlib
- obspy
```

### `requirements.txt`: PyPI-only Packages (If Needed)

```text
some-pypi-package==1.2.3
```

### `apt.txt`: System Software (If Needed)

```text
build-essential
```

### `postBuild`: One-time Setup Commands (Optional)

If you need to run something after packages install, such as downloading a data file or enabling a Jupyter extension, create a `postBuild` file:

```bash
#!/bin/bash
set -e
jupyter labextension install my-extension
```

Before committing, mark it executable:

```bash
chmod +x postBuild
git add postBuild
git commit -m "add postBuild script"
```

These files use the exact same format as the custom image template. If you've worked through [Building a Custom GeoLab Image](./building-custom-images.md), you can reuse them directly.

Once your files are ready, commit, and push them to GitHub:

```bash
git add environment.yml requirements.txt apt.txt
git commit -m "add environment configuration"
git push
```

If this is a new repository, you may need to set the upstream branch on your first push:

```bash
git push -u origin main
```

---

## Step 3: Launch from Your Repo in GeoLab

1. Go to [earthscope.org/data/geolab](https://www.earthscope.org/data/geolab/) and click **Launch GeoLab**.
2. Enter your username and password, then click **Continue**.
3. In the environment selector, choose **Build your own image**.
4. In the **Repository** field, paste the git clone URL for your repository:

```text
https://github.com/your-github-username/my-project.git
```

5. Click **Build Image**. GeoLab will build the environment from your repository. This can take several minutes the first time.
6. When you receive a notification that the build is complete, click **Start**.

> **If the build fails:** Check the build log for error messages. Common causes are a misspelled package name, an unavailable package version, or a syntax error in `environment.yml`. Fix the file, push the commit, and try again.

---

## Step 4: Share Your Environment

To share your environment with someone else, give them the git clone URL for your repository. They follow the same steps: go to GeoLab, choose **Build your own image**, paste the URL, and launch.

Because the environment is defined by files in the repo, anyone who uses the same URL gets the same packages. If you update `environment.yml` and push, the next person to launch picks up the new version automatically.

---

## Updating Your Environment

Edit your configuration files, commit, and push. The next GeoLab launch from that repo URL will rebuild with the updated packages.

```bash
# edit environment.yml, then:
git add environment.yml
git commit -m "add pandas to environment"
git push
```

> **Note:** A new commit triggers a fresh build on the next launch. If you're changing packages frequently, expect slower first launches while GeoLab rebuilds the image.

---

## Quick Reference

| What you want to do | How |
| --- | --- |
| Define your packages | `environment.yml` (conda), `requirements.txt` (PyPI) |
| Launch from a repo | GeoLab → Start Server → Build your own image → paste git clone URL |
| Share your environment | Share the git clone URL (`https://github.com/username/repo.git`) |
| Update your environment | Edit config files, commit, and push |
| Use a fixed versioned environment instead | See [Building a Custom GeoLab Image](./building-custom-images.md) |
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