GitHub - FaithGriffin/CandidaPhylo: Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans. · GitHub

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CandidaPhylo

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Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.

bwa-mem candida-albicans cromwell docker docker-image dockstore json picard samtools wdl-workflow

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Name		Name	Last commit message	Last commit date
.dockstore.yml		.dockstore.yml
Candida-Phylo.inputs.json		Candida-Phylo.inputs.json
Candida-Phylo.wdl		Candida-Phylo.wdl
README.md		README.md

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To run script

Download Anaconda for Linux
Run conda install -c conda-forge miniwdl command.
Edit Candida-Pylo.inputs.json. Specifically, CandidaPhylo.input_samples, CandidaPhylo.input_fastqs_1, and CandidaPhylo.input_fastqs_2.
Run miniwdl run [-i INPUT.json] [-o OUT.json]

About

Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.

bwa-mem candida-albicans cromwell docker docker-image dockstore json picard samtools wdl-workflow

0 stars

1 watching

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