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13 changes: 9 additions & 4 deletions src/pyrecest/filters/interacting_multiple_model_filter.py
Original file line number Diff line number Diff line change
Expand Up @@ -471,17 +471,22 @@ def _prepare_transition_matrix(transition_matrix, n_models):
if pyrecest.backend.any(transition_matrix < 0.0):
raise ValueError("transition_matrix must be elementwise nonnegative.")

row_sums = transition_matrix.sum(axis=1)
if pyrecest.backend.any(row_sums <= 0.0):
row_scales = pyrecest.backend.max(transition_matrix, axis=1)
if pyrecest.backend.any(row_scales <= 0.0):
raise ValueError(
"Each row of transition_matrix must sum to a positive value."
)
if not allclose(row_sums, 1.0):

rows_are_normalized = bool(
pyrecest.backend.all(transition_matrix <= 1.0)
) and allclose(transition_matrix.sum(axis=1), 1.0)
if not rows_are_normalized:
warnings.warn(
"Rows of transition_matrix do not sum to one. Renormalizing rows.",
UserWarning,
)
transition_matrix = transition_matrix / row_sums[:, None]
scaled_rows = transition_matrix / row_scales[:, None]
transition_matrix = scaled_rows / scaled_rows.sum(axis=1)[:, None]
return transition_matrix

@staticmethod
Expand Down
42 changes: 42 additions & 0 deletions tests/filters/test_imm_transition_matrix_overflow.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,42 @@
import unittest

import numpy as np
import numpy.testing as npt

from pyrecest.filters.interacting_multiple_model_filter import (
InteractingMultipleModelFilter,
)


class TestIMMTransitionMatrixOverflow(unittest.TestCase):
def test_normalizes_finite_rows_without_overflow(self):
max_float = np.finfo(float).max
transition_matrix = np.array(
[
[max_float, max_float / 2.0],
[1.0, 1.0],
]
)

with np.errstate(over="raise", invalid="raise", divide="raise"):
with self.assertWarnsRegex(UserWarning, "Renormalizing rows"):
normalized = (
InteractingMultipleModelFilter._prepare_transition_matrix(
transition_matrix, 2
)
)

npt.assert_allclose(
normalized,
np.array(
[
[2.0 / 3.0, 1.0 / 3.0],
[0.5, 0.5],
]
),
)
npt.assert_allclose(normalized.sum(axis=1), np.ones(2))


if __name__ == "__main__":
unittest.main()
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