clsmview

clsmview is an application to work with time-tagged time-resolved (TTTR) confocal laser scanning (CLSM) data. clsmview can be used to

• visualize and convert TTTR CLSM images
• create fluorescence decays based on pixel selections and masks
• and as a tool integrated in other software.

Building and installation

clsmview can be installed from the source code in an python environment that resolves all necessary dependencies. Alternatively, clsmview can be installed via conda.

Source

To install clsmview from the source code clone the git repository and run the setup script.

git clone https://gitlab.peulen.xyz/tpeulen/clsmview
cd clsmviewer
python setup.py install

After installing clsmview you can open the GUI from the commandline.

clsmview

Conda

clsmview can be installed using conda (best in a separate environment)

conda create clsmview
conda activate clsmview
mamba install clsmview -c tpeeulen

To run clsmview activate its environment and use the clsmview command

conda activate clsmview
clsmview