[pull] master from stanfordmlgroup:master#1
Open
pull[bot] wants to merge 313 commits intoFoundryAI:masterfrom
Open
[pull] master from stanfordmlgroup:master#1pull[bot] wants to merge 313 commits intoFoundryAI:masterfrom
pull[bot] wants to merge 313 commits intoFoundryAI:masterfrom
Conversation
…les/user-guide/nokogiri-1.10.8 Bump nokogiri from 1.10.4 to 1.10.8 in /examples/user-guide
fix classification sample code
Get long description from README.md
Fix issue causing large memory consumption in pred_dist()
* Add support for python 3.12 * Drop support for python 3.9 * Bump flake8 and pylint
Release 0.5.0
* Implemented NormalFixedMean * Added NormalFixedVar and NormalFixedMean to test_distns.py * Match log(sigma) parameterization of Normal class * Update __init__.py Linter is demanding a blank line for ending a file (sigh)
Makefile updates and adding support for FixedNormalMean
feat: Add estimator type with reg and clf for NGBClassifier and NGBRegressor
* Update partial_fit to respect validation data Existing logic ignores passed validation data, the if erarly_stopping_rounds control sequence is updated to respect the passed validation data. Co-authored-by: jerome-f <irudayaf@sc1nc008is02.eth.rsiec.sc1.science.roche.com>
* v0.5.5 release
The two parameters `validation_fraction` and `early_stopping_rounds` have been added to the `params` dictionary.
Update parameters in `get_params`
Co-authored-by: Mahmoud <mhegab@raisaenergy.com>
feat: added Weibull distribution
* Update dev dependencies and improve pyproject.toml configuration - Update dev dependencies to latest versions: - pytest: ^6.1.2 → ^8.0.0 - black: ^22.8.0 → ^24.0.0 - pre-commit: ^2.0 → ^4.0.0 - isort: ^5.6.4 → ^5.13.0 - pylint: ^3.0.3 → ^3.2.0 - flake8: ^7.0.0 → ^7.1.0 - Migrate to modern Poetry format: [tool.poetry.dev-dependencies] → [tool.poetry.group.dev.dependencies] - Add [tool.black] configuration with explicit line length and target versions - Improve Python version markers for numpy/scipy using PEP 508 markers Closes #379 * Fix Black target-version configuration Remove py312 and py313 from target-version as they're not supported by the current Black version in CI environment * Update pre-commit configuration - Update Black version from 22.8.0 to 24.10.0 to match pyproject.toml - Fix deprecated default_stages: commit -> pre-commit * Apply linting fixes - Apply Black formatting changes (blank lines after docstrings) - Update code formatting to match updated linter configuration * Update pre-commit-hooks to v6.0.0 - Fix deprecated stage names warning - Update from v2.2.3 to v6.0.0 to use modern pre-commit hooks * update release
* Fix NumPy 2.x natural gradient compatibility issue - Replace vectorized np.linalg.solve with sample-wise computation in scores.py - Add robust dimension checking and error handling - Handle singular matrix cases with pseudo-inverse fallback - Add comprehensive test suite for NumPy 2.x compatibility - Fixes GitHub issue #384: dimension mismatch in natural gradient computation The original issue occurred when np.linalg.solve received incompatible dimensions between metric and gradient arrays. The new implementation: 1. Validates dimensions before computation 2. Solves linear systems sample-by-sample for better stability 3. Provides clear error messages for dimension mismatches 4. Handles singular matrices gracefully All existing tests pass and new compatibility tests verify the fix. * fix veresion * Fix linting issues in test_numpy2_compatibility.py - Fix unbalanced tuple unpacking in make_regression call - Replace broad Exception catching with specific ValueError and LinAlgError - All linter checks now pass * Fix trailing whitespace in scores.py - Remove trailing whitespace that was causing GitHub CI to fail - All linter checks now pass on Python 3.11 * tests: make_regression unpack (X, y) for sklearn compatibility across versions * tests: request coef=True in make_regression and unpack 3 values to satisfy pylint unbalanced-tuple-unpacking across sklearn versions * Fix natural gradient shape handling without performance hit * Delete .evn
* Adding Sympy factory and example notebooks and doc * cleanup helpers from local testing * Update GitHub Actions and refactor code for consistency - Upgrade actions/checkout from v2 to v4 and actions/setup-python from v1 to v5 in pythonpackage.yml - Refactor list comprehensions in betabinomial.py and logitnormal.py for improved readability - Clean up imports and formatting in sympy_utils.py and __init__.py - Remove unnecessary blank lines in test_sympy_existing_distns.py * Add sympy dependency to project configuration * Fix Copilot review issues and add Normal mixture example Address three numerical stability issues from PR #403 review: - Make Y-clamping conditional on log(y) presence in mixture path - Use nan_to_num with finite clamps instead of zeroing gradients - Tighten _fit_mle lower bound from exp(-700) to exp(-150) Add example notebook for 3-component Normal mixture demonstrating that mixtures over R correctly handle negative observations. * Run black formatter on sympy_utils.py * Enhance MLE fitting by including extra parameters and simplify sampling method * Validate class probabilities in make_distribution to ensure finiteness and positivity
* update to Python 3.14
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
20 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
See Commits and Changes for more details.
Created by
pull[bot] (v2.0.0-alpha.4)
Can you help keep this open source service alive? 💖 Please sponsor : )