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H-Mateus/README.md

Hi 👋

I’m a Computational Biologist / Data Analyst based in the UK, working with high-dimensional biomedical data (multi-omics, single-cell, proteomics, and EHR).
I care about reproducible research, clean workflows, and building analysis pipelines that are easy to understand, run, and extend.

Toolbox (stuff I use a lot)

Core R Python Bash Git

Workflows / Reproducibility Nextflow Docker Apptainer Quarto

HPC / Data Linux SLURM PostgreSQL SQL

Editor Neovim

What I do

  • 🧬 Multi-omics & single-cell analysis (e.g., snRNA-seq / scRNA-seq, proteomics)
  • 📈 Statistical modelling for biomedical questions (Bayesian + frequentist)
  • ⚙️ Reproducible pipelines on HPC (workflow automation, containers, version control)
  • 🧑‍🏫 Training & community (R teaching, reproducibility workshops, open science)

Current interests

  • Single-cell analysis with reproducible workflows
  • Practical modelling for clinical/biomedical datasets (EHR + omics)
  • Advocating for better research practises by promoting reproducibility and open science!

If you’d like to collaborate on omics analysis, workflows, or teaching materials, feel free to reach out.

Pinned Loading

  1. MET581---Computing-for-Bioinformatics-and-Genetic-Epidemiology MET581---Computing-for-Bioinformatics-and-Genetic-Epidemiology Public

    Materials used for the R lectures in the MET581 module

    SCSS

  2. presentations presentations Public

    Presentations

    HTML

  3. UKDRI/EBI-workshop---Extracting-information-from-omics-data UKDRI/EBI-workshop---Extracting-information-from-omics-data Public

    Part of the Data-driven approaches to understanding dementia EBI course. The session titled "Extracting information from omics data"

    HTML 2 31

  4. UKDRI/AD-Neurovascular-Atlas UKDRI/AD-Neurovascular-Atlas Public

    BibTeX Style