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17 changes: 12 additions & 5 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ and asks a sharper estimation-theoretic question:
> evidence that the world model itself should change—and can that event signal
> still be identified after realistic release and measurement dynamics?

Version 0.5 implements six computational layers:
Version 0.7 implements seven computational layers:

1. conjugate Dirichlet learning for one transition model;
2. exact HMM filtering over already learned transition contexts;
Expand All @@ -25,7 +25,11 @@ Version 0.5 implements six computational layers:
baselines, and held-out candidate comparison;
6. causal closed-loop triggering with explicit transport delay, randomized
latency, local eligibility traces, yoked sham controls, and held-out recovery
of the causal stimulation window.
of the causal stimulation window;
7. a versioned, leakage-audited replay artifact contract and a prespecified
animal-level comparison of behavioral filtering-to-smoothing revision against
online-surprise, content, location, recency, prospective, and TD-error fields,
with recovery gates and explicit abstention.

This repository is a computational hypothesis-testing project. It does **not**
claim that any candidate has already been established as the biological ACh
Expand Down Expand Up @@ -307,10 +311,13 @@ whether the discrete timescale posterior is concentrated and stable.
- **Stage 5 — complete:** causal online triggering, independently calibrated
delay, randomized timing, yoked active/sham perturbation, eligibility-family
recovery, and falsification against null and latency-independent effects.
- **Stage 6 — next:** replay as smoothing-based revision rather than
unconstrained internally generated prediction error.
- **Stage 6 — implemented, claim-gated:** a leakage-audited replay artifact
contract, filtering-to-smoothing spatial-field comparison, animal-level
simultaneous contrasts, and post-decoder recovery gates. A strict real-data
freeze is still required before making any biological replay claim.

See [`docs/closed_loop.md`](docs/closed_loop.md) for causal triggering and
See [`docs/pf_replay_spatial_revision.md`](docs/pf_replay_spatial_revision.md)
for the replay contract, claim boundary, and fixed analysis; [`docs/closed_loop.md`](docs/closed_loop.md) for causal triggering and
eligibility-window recovery, [`docs/measurement_model.md`](docs/measurement_model.md)
for the ACh measurement derivation,
[`docs/partial_observation.md`](docs/partial_observation.md) for multisensory
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306 changes: 306 additions & 0 deletions docs/pf_replay_spatial_revision.md

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1 change: 0 additions & 1 deletion scripts/check_markdown_math.py
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Expand Up @@ -9,7 +9,6 @@

from pathlib import Path


ROOT = Path(__file__).resolve().parents[1]
SKIP_PARTS = {".git", ".venv", "build", "dist"}

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