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Install the full base runtime for the PokeFlex Bayesian workflow #514

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35 changes: 25 additions & 10 deletions .github/workflows/pokeflex-bma-vs-map-gpuserver4090.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,8 @@ env:
PYTHONUNBUFFERED: "1"
REQUEST_PATH: ops/pokeflex-bma-vs-map-gpuserver4090-request.json
NUMPY_VERSION: "2.2.6"
SCIPY_VERSION: "1.13.1"
PACKAGING_VERSION: "23.0"

jobs:
evaluate:
Expand Down Expand Up @@ -49,7 +51,7 @@ jobs:
test "$(git rev-parse HEAD)" = "${GITHUB_SHA}"
test -z "$(git status --porcelain=v1)"

- name: Bootstrap isolated pinned NumPy runtime
- name: Bootstrap isolated pinned Causal4D base runtime
shell: bash
run: |
set -euo pipefail
Expand All @@ -76,30 +78,43 @@ jobs:
exit 1
fi

runtime="$RUNNER_TEMP/pokeflex-bma-numpy-runtime"
runtime="$RUNNER_TEMP/pokeflex-bma-base-runtime"
rm -rf "$runtime"
mkdir -p "$runtime"
"$selected" -m pip install \
--disable-pip-version-check \
--no-input \
--only-binary=:all: \
--target "$runtime" \
"numpy==${NUMPY_VERSION}" 2>&1 | tee "$output/pip-install.log"
"numpy==${NUMPY_VERSION}" \
"scipy==${SCIPY_VERSION}" \
"packaging==${PACKAGING_VERSION}" \
2>&1 | tee "$output/pip-install.log"

PYTHONPATH="$runtime" "$selected" - <<'PY' > "$output/runtime.txt"
import numpy
import os
import packaging
import numpy
import platform
import scipy
import sys

expected = os.environ["NUMPY_VERSION"]
if numpy.__version__ != expected:
raise SystemExit(
f"unexpected isolated NumPy version: {numpy.__version__} != {expected}"
)
expected = {
"numpy": os.environ["NUMPY_VERSION"],
"scipy": os.environ["SCIPY_VERSION"],
"packaging": os.environ["PACKAGING_VERSION"],
}
observed = {
"numpy": numpy.__version__,
"scipy": scipy.__version__,
"packaging": packaging.__version__,
}
if observed != expected:
raise SystemExit(f"unexpected isolated runtime: {observed} != {expected}")
print("python_executable", sys.executable)
print("python", platform.python_version())
print("numpy", numpy.__version__)
for name, version in observed.items():
print(name, version)
PY
printf 'PYTHON_BIN=%s\n' "$selected" >> "$GITHUB_ENV"
printf 'EVAL_PYTHONPATH=%s\n' "$runtime" >> "$GITHUB_ENV"
Expand Down