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Merge branch 'generate_stat_plot' of https://github.com/JRaviLab/amRd… style.yaml #87: Commit 3b41fcc pushed by AbhirupaGhosh
1m 14s generate_stat_plot
generate_stat_plot
1m 14s
Add AMR summary report for Staphylococcus argenteus style.yaml #86: Commit f7cd204 pushed by AbhirupaGhosh
1m 36s generate_stat_plot
generate_stat_plot
1m 36s
update summary/plot functions style.yaml #85: Commit 9a6e193 pushed by jananiravi
1m 59s generate_stat_plot
generate_stat_plot
1m 59s
rename functions style.yaml #84: Commit ec6209f pushed by jananiravi
1m 32s qc_filtering
qc_filtering
1m 32s
Merge pull request #32 from JRaviLab/readme_desc_fixes style.yaml #83: Commit 201a301 pushed by jananiravi
5m 22s main
main
5m 22s
Add McKim author; update README and URLs style.yaml #82: Commit 4002b04 pushed by jananiravi
4m 25s readme_desc_fixes
readme_desc_fixes
4m 25s
Genome download updates in data_curation.R style.yaml #81: Commit ee3e0e4 pushed by epbrenner
1m 25s qc_filtering
qc_filtering
1m 25s
Patching ref_file_path parameter check style.yaml #80: Commit eec360f pushed by epbrenner
1m 20s qc_filtering
qc_filtering
1m 20s
Swapping BiocParallel back to Future style.yaml #79: Commit b0de152 pushed by epbrenner
1m 43s qc_filtering
qc_filtering
1m 43s
Fixing helper function bug style.yaml #78: Commit 5761630 pushed by epbrenner
1m 28s qc_filtering
qc_filtering
1m 28s
Add more genome quality filters to data_curation.R style.yaml #77: Commit ee9bfcb pushed by epbrenner
3m 52s qc_filtering
qc_filtering
3m 52s
Merge pull request #29 from JRaviLab/add-genome-list-input style.yaml #76: Commit 5e6cf36 pushed by AbhirupaGhosh
4m 34s main
main
4m 34s
Add regression test for genome_id_file pass-through style.yaml #75: Commit cc23cf8 pushed by eboyer221
1m 12s add-genome-list-input
add-genome-list-input
1m 12s
Pass genome_id_file through prepareGenomes() to retrieveMetadata() style.yaml #74: Commit 815c7b9 pushed by eboyer221
4m 49s add-genome-list-input
add-genome-list-input
4m 49s
Update amRdataPlots.R style.yaml #73: Commit 6e86396 pushed by AbhirupaGhosh
1m 41s generate_stat_plot
generate_stat_plot
1m 41s
Update amRdataPlots.R style.yaml #72: Commit 48466d0 pushed by AbhirupaGhosh
1m 12s generate_stat_plot
generate_stat_plot
1m 12s
Merge branch 'main' into generate_stat_plot style.yaml #71: Commit d9b39d1 pushed by AbhirupaGhosh
5m 33s generate_stat_plot
generate_stat_plot
5m 33s
Fix genome_id_file parameter in prepareGenomes style.yaml #70: Commit aa2ace5 pushed by AbhirupaGhosh
6m 43s add-genome-list-input
add-genome-list-input
6m 43s
Enhance retrieveMetadata() with genome list file input option style.yaml #69: Commit f489be6 pushed by AbhirupaGhosh
1m 18s add-genome-list-input
add-genome-list-input
1m 18s
Merge pull request #18 from JRaviLab/add-hmmer style.yaml #68: Commit 6a1fb24 pushed by AbhirupaGhosh
1m 39s main
main
1m 39s
Mark BVBRC_stats vignette Docker chunks eval=FALSE to fix CI style.yaml #67: Commit 523e10b pushed by eboyer221
1m 59s fix-bvbrc-vignette-eval
fix-bvbrc-vignette-eval
1m 59s
Merge main into add-hmmer; migrate runHMMER to BiocParallel; mark .pa… style.yaml #66: Commit 5af62a0 pushed by eboyer221
1m 47s add-hmmer
add-hmmer
1m 47s
Refactor genome_id references in amRdataPlots.R style.yaml #65: Commit 99f8066 pushed by AbhirupaGhosh
1m 58s generate_stat_plot
generate_stat_plot
1m 58s
Map features to cluster (#25) style.yaml #64: Commit 0dc1126 pushed by charmvang
1m 39s main
main
1m 39s
Split cleanData and add Parquet exports (#11) style.yaml #63: Commit 8a8a472 pushed by eboyer221
1m 42s main
main
1m 42s