- Summary statistics from two meta-analyses of GWAS on T2D (DIAGRAM trans-ethnic and GERA-T2D)
- Z-scores for GTEx predictor model SNPs (elastic net; 45 tissue models) imputed to 1000 Genomes phase1 reference panel
- Imputation was performed with ImpG-Summary Software (Version 1.0 July 2013)
- MetaXcan zscore scheme was used to generate gene-level disease association statistics
Note: for 04.4_LocusPlotsWindows.Rmd script, you must manually determine the loci corresponding to each group and ajust the locus six array command calls accordingly