I build tested, reproducible systems for research and engineering—from phylogenetic software and evolutionary-optimization experiments to host anomaly detection and GitHub repository intelligence.
selected-work/
├── qnode/ [DEPLOYED] repository and pull-request intelligence
├── aspartik/ [UPSTREAM] phylogenetic research software
├── swarm-ceop/ [RESEARCH] constrained-optimization benchmarking
└── hostwatch/ [PROTOTYPE] privacy-aware host anomaly detection
[DEPLOYED] QNode Repository Auditor
GitHub App for repository readiness, pull-request risk, companion-test suggestions, CODEOWNERS coverage, review maps, GitHub Checks, and shareable reports. Run the live scanner.
[UPSTREAM] Aspartik contributions
Rust and Python contributions covering phylogenetic tree models, distance algorithms, Python bindings, NEXUS/Newick parsing, SVG rendering, fixtures, tests, and benchmarks.
[RESEARCH] CEOP research software
Reproducible evaluation tooling for evolutionary optimizers across 39 constrained engineering problems, including implementation auditing, evaluation-budget calibration, validation, and execution control.
[PROTOTYPE] ML Host Anomaly Detection
Privacy-aware UEBA prototype using host telemetry, event-derived features, autoencoder scoring, calibrated rules, chronological evaluation, and structured reports.
[OPEN ] kaathewisegit/aspartik #33 [python/tests] Test RF matrices on BEAST trees
[CLOSED] kaathewisegit/aspartik #30 [python/benches] Benchmark RF matrices
[CLOSED] kaathewisegit/aspartik #31 [data/python] Expose triplet distance
[OPEN ] github/advisory-database #9475 [GHSA-vwc7-r8mq-g2x9] adm-zip extraction follows destin...
[MERGED] kaathewisegit/aspartik #32 [python/benches] Generalize tree-distance benchmark
IEEE DCHPC 2026 conference paper on visualizing spatial-data workflows and quantum-inspired candidate stages.
DOI · IEEE Xplore · Scopus · NASA ADS
Indexed in Scopus and the NASA Astrophysics Data System (NASA ADS).
Role-based academic scheduling software with defense windows, polling, voting, authentication, notes, and data export.
$ ls ./more-systems
- Moodle Poll Plugin — academic voting and scheduling with RBAC, CSRF protection, i18n, statistics, and Excel export.
- RNA-seq Analysis — reproducible Snakemake, HISAT2, featureCounts, MultiQC, and DESeq2 workflow.
- SolidJS bModel Visualizer — interactive D3 visualization for phylogenetic model support.
LANGUAGES="Python Rust TypeScript SQL JavaScript C++"
RESEARCH="PyTorch scikit-learn Qiskit DESeq2 DADA2"
SYSTEMS="PostgreSQL Flask Docker RabbitMQ GitHub-Actions"
VISUALS="React SolidJS D3.js"
target research software · machine-learning engineering · open source
status available for collaboration
email mhaque@edu.hse.ru




