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Name the current assignment functions in diversity.md ci #98: Commit 8c996ec pushed by dksuperdock
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Write the reference saving section and fix the dedup rank set ci #97: Commit 6c49dd9 pushed by dksuperdock
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Remove the unwritten flowchart from the references page ci #96: Commit 7b14b19 pushed by dksuperdock
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Remove lab meeting slides from the handbook ci #95: Commit 6bc1443 pushed by dksuperdock
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Address Sharon's handbook review notes ci #94: Commit d98e595 pushed by dksuperdock
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Stop tracking .DS_Store and add it to .gitignore ci #93: Commit 4d1647a pushed by dksuperdock
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Fix post-phyloseq ordering, CLR input, and the diversity join ci #92: Commit 6316fd6 pushed by dksuperdock
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Merge pull request #10 from LAD-LAB/cr403-patch-1 ci #91: Commit 58b7fc5 pushed by dksuperdock
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Update PCA biplot images from FoodSeq paper figure ci #90: Commit a5dae4a pushed by Ashish-Subramanian
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Remove long-read 16S page from the handbook ci #89: Commit 5e32e0c pushed by dksuperdock
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Replace header tabs with collapsible sections in side navbar ci #88: Commit 3be8f51 pushed by dksuperdock
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Write Filtering Samples and Pruning Taxa pages ci #87: Commit 881e39b pushed by Ashish-Subramanian
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Remove references to unpublished foodseq functions from taxa filterin… ci #86: Commit 6b5fbe8 pushed by Ashish-Subramanian
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Write Filtering Taxa page ci #85: Commit e2491b0 pushed by Ashish-Subramanian
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Remove Tracking NAs Across Runs section from reviewing page ci #84: Commit 85fb433 pushed by Ashish-Subramanian
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Write Reviewing Unassigned Taxa page ci #83: Commit b0daf65 pushed by Ashish-Subramanian
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Fill in Setting Up page to-dos ci #82: Commit 46da78d pushed by Ashish-Subramanian
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Replace SQL download scripts to-do with actual instructions ci #81: Commit c49a03e pushed by Ashish-Subramanian
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Document partition and import format options for external users ci #80: Commit 9cfc61d pushed by Ashish-Subramanian
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Add container documentation and download skip note to pipeline page ci #79: Commit e1cbe43 pushed by Ashish-Subramanian
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Update samplefiltering.md with read count guidance ci #78: Commit c4a0185 pushed by dksuperdock
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Adding May 2026 lab meeting slides ci #77: Commit 9bb1b38 pushed by Ashish-Subramanian
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Adding Merging Phyloseqs page (BINF-94) ci #76: Commit 7b6af62 pushed by Ashish-Subramanian
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Fixing Schneider et al. citation authorship ci #75: Commit a8fe8bc pushed by Ashish-Subramanian
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Adding note on supplementing 12Sv5 reference with Schneider human seq… ci #74: Commit 1cd79f1 pushed by Ashish-Subramanian
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