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atac_snvs#62

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rl258 wants to merge 5 commits into
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atac_snvs
Open

atac_snvs#62
rl258 wants to merge 5 commits into
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atac_snvs

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@rl258

@rl258 rl258 commented Apr 13, 2024

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This script identifies SNVs from barcoded reads from ATAC-seq BAM files, and compares the findings to the MAF file. The output file is formatted like a MAF file, with extra columns at the end including the number and list of barcodes that support the SNV.

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rl258 requested a review from Kdreval April 13, 2024 04:18
@rl258 rl258 self-assigned this Apr 13, 2024

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Thanks!
Added few comments

Comment thread atac_snvs/1.0/atac_snvs.py
Comment thread atac_snvs/1.0/atac_snvs.py Outdated
Comment thread atac_snvs/1.0/env.yaml
@rl258
rl258 requested a review from rdmorin April 24, 2024 06:02
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2 participants