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Changes from GSI + lifting improvements#7

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GFJHogue merged 18 commits intomainfrom
gsi-updates
Oct 2, 2025
Merged

Changes from GSI + lifting improvements#7
GFJHogue merged 18 commits intomainfrom
gsi-updates

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@GFJHogue GFJHogue commented Oct 2, 2025

Adding some tweaks to #6:

  • supporting Docker image creation
  • improved liftover logs
  • proper pyfaidx 1-based usage
  • improved liftover handling for MNPs
  • require FILTER PASS field

@GFJHogue GFJHogue self-assigned this Oct 2, 2025
@GFJHogue GFJHogue mentioned this pull request Oct 2, 2025
@GFJHogue GFJHogue marked this pull request as ready for review October 2, 2025 16:16
@GFJHogue GFJHogue changed the title Changes from GSI Changes from GSI + lifting improvements Oct 2, 2025
@GFJHogue GFJHogue merged commit fcc4077 into main Oct 2, 2025
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@GFJHogue GFJHogue deleted the gsi-updates branch October 2, 2025 16:50
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2 participants