Curated knowledge bases for computational biology — awesome lists with companion sites that go beyond link dumps.
Site: liudengzhang.github.io/knowledge-hub
| Project | Description | Links |
|---|---|---|
| Awesome Virtual Cell | AI-driven simulation of cellular behavior through foundation models, perturbation prediction, and virtual tissue microenvironments. | GitHub · Site |
| Awesome Spatial Omics | Spatial omics has more tools than any analyst can evaluate. This list organizes them by the question you're asking and the technology you're using. | GitHub · Site |
| Awesome Spatial Omics Niche | Every method defines "niche" differently. This list tells you how — and what each definition can and cannot find. | GitHub · Site |
| Awesome Pan-Cancer Phosphoproteomics | Without knowing which kinase, which pathway, and which drug, a phosphosite catalog is not a map. This list connects the tools that turn phosphosites into actionable biology. | GitHub · Site |
| Project | Description | Links |
|---|---|---|
| Awesome List Builder | Claude Code skill for building awesome-list repos with MkDocs Material companion sites from scratch. | GitHub |
| Knowledge Hub Verifier | Self-evolving verification skill that checks URLs, DOIs, GitHub repos, and citations across all awesome lists. | GitHub |
Each list is organized around a thesis — a point of view about the field — rather than a flat collection of links. The companion MkDocs sites add depth with paper analyses, concept explainers, method comparisons, and synthesis essays.
Edit the projects array in index.html and update this README.