Conversation
GeorgWa
approved these changes
Mar 9, 2026
alphadia/search_step.py
Outdated
| """Validate that the spectral library contains the required channels for multiplexing.""" | ||
| library_channels = set(self.spectral_library.precursor_df["channel"].unique()) | ||
| target_channels = [ | ||
| int(c) for c in self.config["multiplexing"]["target_channels"].split(",") |
Collaborator
There was a problem hiding this comment.
just TODO FYI, we are using both ; and , as separator across alphadia.
Collaborator
Author
There was a problem hiding this comment.
of course we do :-)
I checked:
multiplexing.target_channels and
search.channel_filter are using ","
library_prediction.fixed_modifications and
library_prediction.variable_modifications are using ";"
anything else you are are aware of?
should we aim to unify that?
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Add a validation to fail early in malformed multiplexing setups.