This repository contains the simulation codes for glc-TOR signaling model.
Codes are written in Julia 1.8.3.
Installation guide for Julia can be found in: https://julialang.org/
GrowthRate.csv: Growth rate data collected from Yazdanbakhsh, N., & Fisahn, J. (2010). Analysis of Arabidopsis thaliana root growth kinetics with high temporal and spatial resolution. Annals of Botany, 105(5), 783-791.
Simple model simulation.ipynb: Jupyter notebook for simulating simple model used in Fig. 1a,b and calculating the error matrix used for drawing heatmap.
Full model simulation.ipynb: Jupyter notebook for simulating full model used in Fig. 5a
By using simple model simulation, you might reproduce the error in the Fig. 1b. By using full model simulation, you can draw graphs in the Fig. 5a