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Releases: MicrobialDarkMatter/GraphMB

v0.2.5

18 Jul 13:06

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  • Update MLflow version
  • Fix data dir missing from src/graphmb
  • Add option to write bins to fasta files (--writebins)

v0.2.4

05 Apr 11:04

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Upgrade packages

v0.2.2

02 Feb 14:34

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version bump

v0.2.0

01 Feb 15:58

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  • Changelog

Added

  • VAE, GCN, SAGE and GAT models based on tensorflow (VAEG code)
  • SCG-based loss to train VAE and GNNs
  • Output assembly stats while starting
  • Eliminate VAMB and DGL dependencies
  • PyPI installation

Changed

  • Code structure changed to load data outside of DGL and use DGL only for the GraphSAGE-LSTM model
  • Log dataloading steps
  • Write cache to numpy files

Fixed

  • Feature files are written to specific directies (fixes #17)

v0.1.5

13 Jul 11:52

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Use contig graph

v0.1.4

12 Apr 08:16

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v0.1.4 Fixes #7

v0.1.3

25 Feb 14:37

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delete files

v0.1.2

14 Dec 08:24

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Entrypoint setup