docs: surface genotype + clonal on homepage & Choose-your-path (and fix dead learn page) - #11
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- index: add a Genotype capability card (7th) + accent; tie genotype-inference benchmarking into the Benchmark feature card; add Genotype / Clonal / Benchmark rows to the Choose-your-path table - learn: add dedicated Genotype, Clonal, and Benchmark reader paths (and give clonal its own path instead of being buried under the biology path) - fix: drop the 'learn.md' -> getting-started redirect that was clobbering the built learn.html (the Choose-your-path page was unreachable)
…_allele API, stale audit-docs links, stale 'no frequency prior' line
…omise, disambiguate cartridge nav, trim homepage router to marquee paths, fix getting-started CTA, refresh stale mkdocs header
…mepage paths - Convert guides/productive.md from migration stub into a full guide (productive triad, constrain-before-propose, SHM interaction, AIRR productive field, when to use) and add it to the nav. - Repoint 6 live->stub links to live equivalents (pipeline concept -> Experiment builder / Core concepts; cartridge estimators -> Estimate models from data; v-subregion annotations -> Build a reference cartridge; tune-corruption -> corruption-sequencing; v-usage -> recombination-junction allele-universe; two-layer-model -> architecture two-layer section). - Restore the reference-cartridge / validation / API homepage routes by expanding 'Choose your path' to six paths.
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Summary
Post-2.3.0 docs polish so the genotype suite (and clonal work) are discoverable from the landing pages, plus a fix for a pre-existing redirect bug that made the "Choose your path" page unreachable.
Docs-only.
Index page (
index.md)cap-genotypeaccent.Choose-your-path page (
learn.md)Fix: dead "Choose your path" page
"learn.md": "getting-started/index.md", which overwrote the builtlearn.htmlwith a redirect stub — so the nav's "Choose your path" tab bounced to getting-started andlearn.md's content never rendered at its URL. Removed that one entry;learn.htmlnow serves the real (enhanced) page. All other redirect mappings are unchanged.Test plan
mkdocs buildclean (exit 0, no warnings/broken links).index.htmlrenders 7 capability cards + the 3 new path rows; Benchmark card updated.learn.htmlis now the full page (55 KB) with all 8 paths (previously a 486-byte redirect stub).