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Sync dev and main - #455

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BBeltz1 wants to merge 63 commits into
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dev
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BBeltz1 wants to merge 63 commits into
mainfrom
dev

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@BBeltz1

@BBeltz1 BBeltz1 commented Sep 23, 2026 •

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WORK IN PROGRESS. DO NOT MERGE.

PRs into dev contained all necessary info. They have already been approved.
Please provide the information below so main can be synced with dev:

List PRs

List the PRs that were merged into dev that will be pulled into main and any issues they fix:

Types of changes

What types of changes does this pull request introduce? Put an x in the boxes that apply.
This will inform the new release number.

  • Fix (non-breaking change which fixes a bug)
  • Feature (non-breaking change which adds or changes functionality)
  • Breaking change (fix or feature that would cause existing functionality to not work as expected)
  • Other change (if none of the other choices apply)

If "Fix", "Feature" or "Breaking Change" have been selected above, the following files should be revised for a new release:

  • NEWS.md - add release notes
  • DESCRIPTION - increment the version number according to Semantic Versioning

Reviewer instructions

The underlying PRs should have been reviewed. Please check that dev is merging into main and that NEWS.md and DESCRIPTION have been included correctly.

atyrell3 and others added 30 commits July 10, 2026 13:50
BBeltz1 and others added 30 commits September 25, 2026 11:49
Feature(#410): update plot_condition to show absolute (not rescaled) condition
…nomaly

Fix(#447): Restore `plot_forage_anomaly(report = "NewEngland")`
Docs(#449): Remove "NewEngland" from `plot_seabird_mab` attributes
…extable

Feature(#445): Convert `plot_wind_occupancy` to `flextable`
…flextable

Feature(#444): Convert `plot_wea_landings_rev` to `flextable`
…-flextable

Feature(#440): Convert `plot_community_factors` to `flextable`
Feature(#439): Rewrite `plot_cold_pool` behavior
…ield_energy$Lon` to `preyfield_energy$Latitude` and `preyfield_energy$Longitude`
…olumn names for `seasonal_oisst_anom_gridded`
…$units` to `storminess$Time` and `storminess$Units`
…-columns

Feature!(#466): Rename irregular columns
…s a bootstrap method, this ensures that plots will be reproducible
feature: add set.seed to arfit for short term trends. because arfit i…

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