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NaghmehRezaei/README.md

Hi, I’m Naghmeh

I’m a computational biologist working at the intersection of single-cell and spatial transcriptomics, explainable machine learning, and mechanistic systems biology.

My work focuses on translating complex experimental data into biologically interpretable and reproducible models that support hypothesis generation, experimental validation, and discovery.

Core interests

  • Single-cell & spatial omics
  • Multimodal integration (RNA, ATAC, spatial)
  • Explainable ML for biomarker discovery
  • Causal and mechanistic modeling
  • Reproducible HPC workflows

📫 LinkedIn: www.linkedin.com/in/naghmehrezaei

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  1. NaghmehRezaei NaghmehRezaei Public

    1

  2. snRNAseq-workflows snRNAseq-workflows Public

    Single-nuclei RNA-seq analysis workflows with QC, integration, and ML-based representations

    R 1

  3. Sarekflow-somatic-NGS-platform Sarekflow-somatic-NGS-platform Public

    Research-use full-stack platform for matched tumor–normal somatic variant calling with React, FastAPI, Celery, Nextflow, SLURM, Apptainer, nf-core/sarek, GATK Mutect2, MultiQC, and secure results d…

    Python