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Nandishounak/README.md

Hi, I'm Shounak Nandi πŸ‘‹

Biomedical engineer & neuroimaging researcher working at the intersection of MRI physics, reproducible data pipelines, and clinical research. I work with diffusion-MRI, functional MRI, and brain-age models for pediatric cancer survivor populations, and turn messy neuroimaging workflows into pipelines that actually run end-to-end on HPC.

Currently a Study Coordinator in Radiology at Albert Einstein College of Medicine (PI: Tim Duong), working on neuroimaging of pediatric cancer survivors.

Outside the lab: guitar, badminton, and chasing clear skies for astrophotography πŸ”­ β€” planetary conjunctions and the occasional moon shot.


πŸ”¬ What I work on

  • Brain-age prediction in pediatric cancer survivors β€” DL model ensembles (ViT / CNN, diffusion-based) in PyTorch
  • Diffusion-MRI microstructure β€” NODDI, DKI, WMTI, and free-water modeling applied to different clinical cohorts like leukemia survivors, ASD
  • Functional MRI preprocessing - Preprocessing of functional MRI data for resting-state and task-based fMRI studies
  • Reproducible HPC pipelines β€” registration (ANTs), preprocessing, and analysis workflows built to run reliably on a Slurm cluster
  • Recently submitted a Systematic review on chemotherapy-related brain changes in pediatric cancer survivors (under review)

πŸ“„ Selected publications

Full list on Google Scholar β†’


πŸ”— Find me

Google Scholar ResearchGate Portfolio LinkedIn


πŸ› οΈ Tools

Python R MATLAB Bash Git LaTeX Slurm Linux

Neuroimaging stack: FreeSurfer Β· FSL Β· ANTs Β· dipy Β· MRtrix Β· SPM Β· TBSS Β· NODDI Β· DICOM / NIfTI / BIDS


πŸ’¬ Ask me about

Neuroimaging pipelines Β· quantitative MRI physics Β· building reproducible research workflows on HPC Β· life abroad as an expat (US πŸ‡ΊπŸ‡Έ / Germany πŸ‡©πŸ‡ͺ)

Profile README inspired by the classic GitHub self-README format.

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  1. nandishounak.github.io nandishounak.github.io Public

    CSS

  2. mri4all/console mri4all/console Public

    MRI4ALL Console software, main repo

    Python 21 14

  3. imr-framework/imr-framework.github.io imr-framework/imr-framework.github.io Public

    JavaScript 6 1