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diaPASEF non specific peptidome index out of bound MSFragger

Status: Open.

#2664 In Nesvilab/FragPipe;

· IBMDS2023 opened on Feb 10, 2026

diatracer error

Status: Open.

#2663 In Nesvilab/FragPipe;

· iorera opened on Feb 10, 2026

RT calibrated in report.tsv of dia-quant-output

Status: Open.

#2662 In Nesvilab/FragPipe;

· NikolaMonteverde opened on Feb 10, 2026

OSError: [Errno 22]

Status: Open.

#2653 In Nesvilab/FragPipe;

· mmcilvin opened on Feb 2, 2026

Missing Ion Mobility and CV values from library in hybridDIA v23.1

Status: Open.

#2652 In Nesvilab/FragPipe;

· NikolaMonteverde opened on Feb 2, 2026

SpecLib Problem w/ FP24

Status: Open.

#2649 In Nesvilab/FragPipe;

· jjGG opened on Jan 27, 2026

Export matched fragments (and batch spectra export) not reporting c- and z-ions

Status: Open.

#2647 In Nesvilab/FragPipe;

· iahendriks opened on Jan 26, 2026

SILAC-TMT hyperplex

Status: Open.

#2625 In Nesvilab/FragPipe;

· JohnSuberu opened on Jan 16, 2026

write sub-mzml files for timstof data

Status: Open.

#2592 In Nesvilab/FragPipe;

· jd690764 opened on Dec 12, 2025

PTM Assignment in Combined Peptide Results

Status: Open.

#2584 In Nesvilab/FragPipe;

· KZ-MS opened on Dec 8, 2025

FileNotFoundError: [Errno 2] No such file or directory - diatracer.psmpkl missing

Status: Open.

#2582 In Nesvilab/FragPipe;

· Althalis opened on Dec 8, 2025

Metadata-aware MBR

Status: Open.

#2564 In Nesvilab/FragPipe;

· leonardblaschek opened on Nov 25, 2025