feat: native Databricks Mosaic AI provider + cBioPortal showcase refactor#80

Merged

deanban merged 26 commits into

mainfrom

dean/refactor/cbioportal-showcase-extract

Apr 23, 2026

Commits on Apr 21, 2026

feat: add DomainContext model, CLI flag, and pipeline wiring
deanban
committed
feat: add staged L2 schemas, Stage A/B prompts, and trigger logic
deanban
committed
feat: wire A→B→C→merge pipeline with recovery and enriched vocab context
deanban
committed
feat: add eval harness — assertion dump, diff, telemetry, dev slice
deanban
committed
feat: add domain-aware prompts and healthcare few-shot library
deanban
committed
test: add Stage C trigger, execution, merge, and partial failure tests
deanban
committed
feat: add cBioPortal + OMOP ingest pipeline and Databricks bridge
deanban
committed
chore: gitignore .wolf/ OpenWolf context directory
deanban
committed
feat: add sema eval CLI for dev-slice runner, diff, and milestone report
deanban
committed
fix: populate real latency and token telemetry in staged L2 pipeline
deanban
committed
chore(eval): add dev_slice_poc.yaml matching current Databricks cBioPortal ingest
deanban
committed
fix: sanitize LLM-leaked type suffix from Stage B column names
deanban
committed
fix(few-shot): add synonyms to Stage B examples and compact JSON format
deanban
committed
eval: add dev-slice rollout artifacts for steps 2–5
deanban
committed
feat(ingest): add cBioPortal SV, CNA, gene-panel-matrix, and resource parsers
deanban
committed
eval: expand dev slice to 12 tables, re-run full pipeline on GBM ingest
deanban
committed
refactor: remove deprecated single-pass and two-pass L2 code (Task 11)
deanban
committed
eval: post-cleanup sanity run on 12-table slice
deanban
committed
eval: verification run after Neo4j wipe + Task 11 cleanup
deanban
committed
docs(eval): add step 6 milestone summary for 12-table POC slice
deanban
committed
refactor: extract cBioPortal ingest and slice YAMLs to showcase/cbioportal_to_omop/
deanban
committed
feat(few-shot): add generic base layer and split domain packs into modules
deanban
committed
Merge remote-tracking branch 'origin/main' into dean/refactor/cbioportal-showcase-extract
deanban
committed

Commits on Apr 22, 2026

ci: drop single-entry python matrix so test context matches branch rule
deanban
committed

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feat: native Databricks Mosaic AI provider + cBioPortal showcase refactor#80

feat: native Databricks Mosaic AI provider + cBioPortal showcase refactor#80
deanban merged 26 commits into
mainfrom
dean/refactor/cbioportal-showcase-extract

Commits on Apr 21, 2026

feat: add DomainContext model, CLI flag, and pipeline wiring

feat: add staged L2 schemas, Stage A/B prompts, and trigger logic

feat: wire A→B→C→merge pipeline with recovery and enriched vocab context

feat: add eval harness — assertion dump, diff, telemetry, dev slice

feat: add domain-aware prompts and healthcare few-shot library

test: add Stage C trigger, execution, merge, and partial failure tests

feat: add cBioPortal + OMOP ingest pipeline and Databricks bridge

chore: gitignore .wolf/ OpenWolf context directory

feat: add sema eval CLI for dev-slice runner, diff, and milestone report

fix: populate real latency and token telemetry in staged L2 pipeline

chore(eval): add dev_slice_poc.yaml matching current Databricks cBioPortal ingest

fix: sanitize LLM-leaked type suffix from Stage B column names

fix(few-shot): add synonyms to Stage B examples and compact JSON format

eval: add dev-slice rollout artifacts for steps 2–5

feat(ingest): add cBioPortal SV, CNA, gene-panel-matrix, and resource parsers

eval: expand dev slice to 12 tables, re-run full pipeline on GBM ingest

refactor: remove deprecated single-pass and two-pass L2 code (Task 11)

eval: post-cleanup sanity run on 12-table slice

eval: verification run after Neo4j wipe + Task 11 cleanup

docs(eval): add step 6 milestone summary for 12-table POC slice

refactor: extract cBioPortal ingest and slice YAMLs to showcase/cbioportal_to_omop/

feat(few-shot): add generic base layer and split domain packs into modules

Merge remote-tracking branch 'origin/main' into dean/refactor/cbioportal-showcase-extract

Commits on Apr 22, 2026

ci: drop single-entry python matrix so test context matches branch rule

Commits on Apr 23, 2026

feat(providers): native Databricks Mosaic AI provider

Merge branch 'main' into dean/refactor/cbioportal-showcase-extract