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Completed Deployment - #1881

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JoshuaSBrown merged 72 commits into
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Apr 1, 2026
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JoshuaSBrown merged 72 commits into
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How Has This Been Tested?

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  • - A description of the PR has been provided, and a diagram included if it is a new feature.
  • - Formatter has been run
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  • - If new feature a unit test has been added

JoshuaSBrown and others added 30 commits November 17, 2025 07:34
* [DAPS-1585] - update: dependencies, upgrade ssl dependency. 3.2.5 (#1646)
* [DAPS-1605] - fix: scripts, install_foxx.sh by splitting ssl_args (#1623)
* [DAPS-1651] - refactor: scripts, compose, univify treatment of env variables in compose env generator (#1656) (#1658)
* [DAPS-1675] - feature: foxx, adding the logger functions for future PR's (#1675)
* [DAPS-1659] - refactor: scripts, remove dependencies install scripts (#1660)
* [DAPS-1670] - feature: common, core, repo, python_client, web, allow passing repo types in protobuf messages (#1670)
* [DAPS-1671] - feature: foxx, add repository and execution strategy types (#1672)
* [DAPS-1661] - refactor: compose, scripts, remove remaining occurences of zeromq system secret. (#1661)
* [DAPS-1522] - refactor: foxx, user router logging improvements, remove non helpful logs from tasks.js (#1629)
* [DAPS-1691] - refactor: foxx, adjust validation.js swap g_lib with error_code require rem… (#1691)
* [DAPS-1692] - tests: ci, End-to-end web tests, fix flaky test (#1693)
* [DAPS-1694] - refactor: foxx, move permissions functions from support.js to lib/permissions (#1695)
* [DAPS-1685] - feature: compose, enable arangodb ssl (#1687)
* [DAPS-1700] - fix: ci, limit arangodb job output to last 3 hours. (#1701)
* [DAPS-1676] - feature: foxx, arango add factory for repositories for metadata and globus (#1697)
* [DAPS-1718] - feature: web, core, python client, Protobuf ExecutionMethod enum, add RepoAllocationCreateResponse (#1719)
* [DAPS-1713] - refactor: core, web, python client, protobuf, allow optional fields when creating repo to support metadat… (#1714)
* [DAPS-1715] - refactor: core, make path, pub_key, address, endpoint optional in repoCreateRequest (#1716)
* [DAPS-1705] - feature: foxx, integrate metadata globus factory repo router create (#1706)
* [DAPS-1688] - update: dependencies, core, repo, authz, gcs, Crypto libssl switched to version 3 globus_sdk version pinned (#1689)
* [DAPS-1729] - fix: ci, downstream datafed dependencies pipelines are building the container image from incorrect sha (#1732)
* [DAPS-1711] - refactor: foxx standardize repo response schema (#1712)
* [DAPS-1725] - refactor: remove confusing apache conf file. (#1728)
* [DAPS-1707] - update: dependencies, web, update web dependencies before install (#1709)
* [DAPS-1522] - refactor: foxx, task router logging improvements (#1648)
* [DAPS-1522] - refactor: foxx, query router logging improvements (#1627)
* [DAPS-1735] - bug: foxx, remove duplicate user_router test (#1736)
* [DAPS-1731] - reature: scripts, compose, add scripts to generate globus credentials for web service (#1731)
* [DAPS-1725] - refactor: tests, mock core server centralized (#1726)
* [DAPS-1741] - update: scripts, native client id in intialize_globus_endpoint and globus_clea… (#1741)
* [DAPS-1745]  - fix: scripts, account for nested client credentials. (#1746)
* [DAPS-1725-2] - fix; tests, centralized mock core service libraries fixed (part 2) (#1747)
* [DAPS-1742] - refactor script replace os.path.join with urllib.parse.urljoin (#1744)
* [DAPS-1749] - refactor: cmake, set cmake policy to silence noisy warning. (#1750)
* [DAPS-1522] - refactor: foxx, feature tag router logging improvements (#1734)
* [DAPS-1378] - fix: web, mapping of multiple globus accounts. (#1753)
* [DAPS-1756] - fix: scripts, foxx, add retries and connection check to install_foxx.sh script. (#1757)
* [DAPS-1522] - refactor: foxx, Version Router Logging Improvements (#1758)
* [DAPS-1737] - refactor: compose, cleanup arango ssl env variables (#1765)
* [DAPS-1766] - fix: ci, python client provisioning job
* [DAPS-1663] - feature: core Service, adding Correlation ID to Logging (#1704)

Co-authored-by: Aaron Perez <perezam@ornl.gov>
Co-authored-by: AronPerez <aperez0295@gmail.com>
Co-authored-by: Blake Nedved <nedvedba@ornl.gov>
Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com>
Co-authored-by: nedvedba <145805866+nedvedba@users.noreply.github.com>
Co-authored-by: Austin Hampton <amh107@latech.edu>
Co-authored-by: Austin Hampton <44103380+megatnt1122@users.noreply.github.com>
Co-authored-by: Blake Nedved <blakeanedved@gmail.com>
Co-authored-by: Polina Shpilker <infinite.loopholes@gmail.com>
…se. (#1778)

[DAPS-1786] - Web tests, refactor: add test for hitting password reset. (#1787)
… tests (#1779)

* [DAPS-1775] - fix: core, foxx, add missing {}, foxx query_router add params object schema to routes. (#1781)
* [DAPS-1777] - fix: foxx, user_router fix regression in missing response. (#1778)
* [DAPS-1786] - refactor: web tests, add test for hitting password reset. (#1787)
* [DAPS-1277] - fix: mock, core, common, PROXY_BASIC_ZMQ and PROXY_CUSTOM correctly defined
* [DAPS-1790] - fix: common, core, repo, zmq assertion failure during EXCEPT call due to callin zmq_msg with invalid state after closing it.
* [DAPS-1791] - fix: build, python client, requirements.txt was being moved to a folder named requirements.txt during cmake configure script.
* refactor: only print subset of user properties.

* chore: Auto-format JavaScript files with Prettier
Co-authored-by: Joshua S Brown <joshbro42867@yahoo.com>
Co-authored-by: Joshua S Brown <joshbro42867@yahoo.com>
Co-authored-by: Joshua S Brown <joshbro42867@yahoo.com>
Co-authored-by: Joshua S Brown <joshbro42867@yahoo.com>
nedvedba and others added 24 commits February 2, 2026 04:16
fix jsdoc commend
* [DAPS-1825] - upgrade (dependencies) pin to new datafed dependencies submodule with updated openssl (#1826)
Co-authored-by: JoshuaSBrown <brownjs@ornl.gov>
* [DAPS-1837] - refactor: core server to support proto3 (#1844)
* [DAPS-1845] - refactor repo server to use proto3 (#1846)
* [DAPS-1847] - refactor: python package to be compatible with proto3 envelope (#1849)
* [DAPS-1848] - refactor: update authz files to use proto3. (#1851)
* [DAPS-1850] - refactor web server proto3 (#1852)
#1861) (#1866)

* fix: prevent defaults being set to undefined, and interpret numbers and enums as strings.

* chore: Auto-format JavaScript files with Prettier

Co-authored-by: Joshua S Brown <joshbro42867@yahoo.com>
* fix: prevent defaults being set to undefined, and interpret numbers a… (#1861)

* fix: prevent defaults being set to undefined, and interpret numbers and enums as strings.

* chore: Auto-format JavaScript files with Prettier

* fix: version numbers from proto3 messages follow camel case. (#1868)

---------

Co-authored-by: Joshua S Brown <joshbro42867@yahoo.com>

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Sorry, we are unable to review this pull request

The GitHub API does not allow us to fetch diffs exceeding 300 files, and this pull request has 326

@JoshuaSBrown

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@nedvedba - Can we close this, all the changes from the last release have been merged already?

nedvedba and others added 3 commits March 31, 2026 05:06
* refactor: core server files refactored to support re-use in the mock implementation

* refactor: changed mock core server to work with proto3 and reusue abstractions from core server.

* fix: prevent defaults being set to undefined, and interpret numbers a… (#1861)

* fix: prevent defaults being set to undefined, and interpret numbers and enums as strings.

* chore: Auto-format JavaScript files with Prettier

* fix: version numbers from proto3 messages follow camel case. (#1868)

* docs: fix jsdoc error.

* [DAPS-1862] - fix allocation change failure (#1864)

* [DAPS-1663] Adding LogContext to dbGetRaw, Correlation_ID to dbMaintenance, metricThread and task_worker (#1885)

Co-authored-by: Joshua S Brown <joshbro42867@yahoo.com>
Co-authored-by: Joshua S Brown <brownjs@ornl.gov>

* fix: mock_core server build (#1890)

* [DAPS-1887] - refactor: facility fuse, remove dead code. (#1888)

* [DAPS-1857] - feature: python client, tests, support schema functions, to hit feature parity with web ser… (#1859)

* [DAPS-1855] - feature, core, add schema factory to decouple schema logic (#1891)

* [DAPS-1896] - feature: foxx, schema format and type added to schema create API (#1897)

* [DAPS-1893] - feature: common, proto3 add fields for schema type, format, and metadata format (#1894)

* [DAPS-1830-1] - core foxx refactored json schema integration 1 (#1892)

* [DAPS-1857-2] python client schema support (#1895)

Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com>

* [DAPS-1830-2] - core foxx refactored json schema integration (#1899)

* [DAPS-1902] - core, common, feat: get schema api client into compliance with API spec file. (#1903)

* [DAPS-1906-1] - feature: add core unit testing to CI (#1907)

Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com>

* [DAPS-1830-3] - core foxx refactored json schema integration 3 1827 (#1898)

* [DAPS-1910] - upgrade: playwright 1.51.1 version. (#1911)

* [DAPS-1914] - bug, web schema id name version mismatch (#1915)

* [DAPS-1913] - refactor: foxx ci test scripts consolidate database name and default to different database for tests (#1917)

* [DAPS-1916] - tests add integration test for schema client handler to cmake (#1918)

Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com>

---------

Co-authored-by: JoshuaSBrown <brownjs@ornl.gov>
Co-authored-by: Joshua S Brown <joshbro42867@yahoo.com>
Co-authored-by: Austin Hampton <44103380+megatnt1122@users.noreply.github.com>
Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com>
* [DAPS-1912] - refactor: register linkml storage engine with schema handler (#1912)

* [DAPS-1919] - python, web support linkml schema (#1921)

* [DAPS-1923] - update: version numbers bumped. (#1923)

---------

Co-authored-by: Austin Hampton <44103380+megatnt1122@users.noreply.github.com>
Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com>
@JoshuaSBrown
JoshuaSBrown merged commit d7cd612 into master Apr 1, 2026
14 of 15 checks passed
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4 participants