This repository contains open-source code, data, & text files.
Raw amplicon sequence files can be found at NCBI SRA [BioProject].
- Aim: To characterize environmental microbiomes collected from surface and ground water samples at Sylvan Heights Bird Park in 2017.
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analyses: An R Markdown file that includes R script written by Foote, Balakrishnan, and Peralta.
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bin:
- MothurTools.R: An R script written by Dr. Mario E. Muscarella (website) containing functions used in the analysis of community sequence data.
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data: Files associated with amplicon data sets.
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figures: Figures (microbes-16S rRNA amplicon) generated according to R script located in R Markdown file.
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mothur: Files containing script for bioinformatic analysis of 16S rRNA gene sequences (Illumina MiSeq platform) using mothur pipeline.
Dustin Foote: PhD Candidate, Department of Biology, East Carolina University & General Curator at Sylvan Heights Bird Park
Dr. Chris Balakrishnan (website): Adjunct Associate Professor, Department of Biology, East Carolina University
Dr. Ariane Peralta (website): Associate Professor, Department of Biology, East Carolina University