Not all HPCs (ex. ZIB) are set up to work with DuckDB download settings. Proposed fix TBD
Current temp fixes are:
- Manual download and
snakemake --touch to force use of manually downloaded files
- Adding proxy settings. Specifically for ZIB cluster:
duckdb.query("SET http_proxy='squid.zib.de:3128';")```
http_proxy could be parameterized from the environment variable `http_proxy` and this is probably the best long term solution to be implemented in a PR
Not all HPCs (ex. ZIB) are set up to work with DuckDB download settings. Proposed fix TBD
Current temp fixes are:
snakemake --touchto force use of manually downloaded files