NSPN_CODE

Code written for the NSPN project By Kirstie Whitaker Contact information: kw401@cam.ac.uk

Name		Name	Last commit message	Last commit date
Latest commit History 759 Commits
CALIBRATION_STUDY		CALIBRATION_STUDY
DATA_SETUP		DATA_SETUP
PREPROCESSING		PREPROCESSING
QUALITY_CONTROL		QUALITY_CONTROL
.gitattributes		.gitattributes
.gitignore		.gitignore
CTMT_figures.py		CTMT_figures.py
CTMT_figures_20151116.py		CTMT_figures_20151116.py
CTMT_table.py		CTMT_table.py
CTMT_table_new.py		CTMT_table_new.py
CT_analysis_wrapper.py		CT_analysis_wrapper.py
Export_data.py		Export_data.py
Extract_ParcROIs.sh		Extract_ParcROIs.sh
LobesStrictLUT.txt		LobesStrictLUT.txt
NSPN_functions.py		NSPN_functions.py
NetworkMeasuresCTMTetc.m		NetworkMeasuresCTMTetc.m
Notes.txt		Notes.txt
Parcellation_PostEdits.sh		Parcellation_PostEdits.sh
README.md		README.md
annotate_images_to_movie.py		annotate_images_to_movie.py
connectivity_extract.py		connectivity_extract.py
connectivity_loop.m		connectivity_loop.m
create_data_dictionary.py		create_data_dictionary.py
create_data_dictionary_20151114.py		create_data_dictionary_20151114.py
demographics_table.py		demographics_table.py
destrieux_labels_order.txt		destrieux_labels_order.txt
fill_measure_dict.py		fill_measure_dict.py
freesurfer_combine_CT_stats.sh		freesurfer_combine_CT_stats.sh
freesurfer_combine_rois_stats.sh		freesurfer_combine_rois_stats.sh
freesurfer_extract_CT.sh		freesurfer_extract_CT.sh
freesurfer_extract_dti_rois.sh		freesurfer_extract_dti_rois.sh
freesurfer_extract_rois.sh		freesurfer_extract_rois.sh
freesurfer_lobes.sh		freesurfer_lobes.sh
freesurfer_probtrackx.sh		freesurfer_probtrackx.sh
freesurfer_project_dti.sh		freesurfer_project_dti.sh
freesurfer_project_to_surface.sh		freesurfer_project_to_surface.sh
freesurfer_rois_behavmerge.py		freesurfer_rois_behavmerge.py
freesurfer_vertex_analysis.sh		freesurfer_vertex_analysis.sh
freesurfer_vertex_analysis_multipleSmoothing.sh		freesurfer_vertex_analysis_multipleSmoothing.sh
interim_analysis_extract_freesurfer.py		interim_analysis_extract_freesurfer.py
interim_analysis_extract_freesurfer_lobes.py		interim_analysis_extract_freesurfer_lobes.py
lalaland.sh		lalaland.sh
making_synthetic_data.py		making_synthetic_data.py
mapping_parcellation_to_lobes.py		mapping_parcellation_to_lobes.py
networkx_functions.py		networkx_functions.py
parc500LUT.txt		parc500LUT.txt
permutation_stats.py		permutation_stats.py
probtrackx_create_connectivity_matrix.py		probtrackx_create_connectivity_matrix.py
pysurfer_plot_surface_values_combineMeasures.py		pysurfer_plot_surface_values_combineMeasures.py
pysurfer_plot_surface_values_csvfile.py		pysurfer_plot_surface_values_csvfile.py
regional_correlation_functions.py		regional_correlation_functions.py
replication_tables.py		replication_tables.py
setup_connectivity_files.sh		setup_connectivity_files.sh
stats_functions.py		stats_functions.py
values_in_manuscript.py		values_in_manuscript.py
violin_plots_MTdiffdepths.py		violin_plots_MTdiffdepths.py

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