v0.1.1

What's Changed

• Fix/sqmass access by @jcharkow in #153
• Patch/sq mass loader low mem by @jcharkow in #154
• deps: bump charset-normalizer from 3.3.2 to 3.4.0 by @dependabot[bot] in #149
• check_sqlite_table: also check if entires in table by @jcharkow in #155
• deps: bump pyparsing from 3.1.4 to 3.2.0 by @dependabot[bot] in #146
• deps: bump debugpy from 1.8.6 to 1.8.7 by @dependabot[bot] in #148
• deps: bump sphinx-rtd-theme from 2.0.0 to 3.0.1 by @dependabot[bot] in #147
• deps: bump jedi from 0.19.1 to 0.19.2 by @dependabot[bot] in #157
• deps: bump debugpy from 1.8.7 to 1.8.12 by @dependabot[bot] in #168
• deps: bump tqdm from 4.67.0 to 4.67.1 by @dependabot[bot] in #162
• deps: bump bokeh from 2.4.3 to 3.6.2 by @dependabot[bot] in #164
• Revert "deps: bump bokeh from 2.4.3 to 3.6.2" by @jcharkow in #170
• deps: bump executing from 2.1.0 to 2.2.0 by @dependabot[bot] in #173
• deps: bump ipython from 8.29.0 to 8.32.0 by @dependabot[bot] in #172
• deps: bump nbclient from 0.10.0 to 0.10.2 by @dependabot[bot] in #171
• deps: bump certifi from 2024.8.30 to 2025.1.31 by @dependabot[bot] in #178
• deps: bump bokeh from 2.4.3 to 3.6.3 by @dependabot[bot] in #177
• Patch/plot by qvalue by @jcharkow in #169
• Feature: DIA-NN XIC parquet access by @jcharkow in #175
• deps: bump kiwisolver from 1.4.7 to 1.4.8 by @dependabot[bot] in #180
• deps: bump blinker from 1.8.2 to 1.9.0 by @dependabot[bot] in #181
• ✨ Set up Copilot instructions with network timeout handling by @Copilot in #193
• Fix CI Tests by @jcharkow in #201
• deps: bump referencing from 0.35.1 to 0.37.0 by @dependabot[bot] in #200
• deps: bump requests from 2.32.3 to 2.32.5 by @dependabot[bot] in #203
• deps: bump pandas from 2.2.3 to 2.3.3 by @dependabot[bot] in #202
• OpenSWATH XIC parquet reader by @jcharkow in #188
• deps: bump msgpack from 1.1.0 to 1.1.2 by @dependabot[bot] in #205
• Address reviewer comments on PR #191: documentation, imports, Python 3.12 support, and nested .oswpqd handling by @Copilot in #207
• Add memory-efficient .oswpq parser with PyArrow lazy evaluation by @Copilot in #191
• deps: bump narwhals from 1.13.2 to 2.13.0 by @dependabot[bot] in #209
• fix: catch proper runnames when have 2 file extensions (e.g. xic.parquet) by @jcharkow in #179
• upgrade packages in requirements by @jcharkow in #210
• deps: bump plotly from 5.24.1 to 6.5.0 by @dependabot[bot] in #204
• feat: upgrade to Syrupy 5.0.0 and regenerate all snapshots by @Copilot in #212
• Update Copilot instructions for committing files by @singjc in #213

New Contributors

• @Copilot made their first contribution in #193

Full Changelog: v0.1.0...v0.1.1

v0.1.0

Full Changelog: v0.0.10...v0.1.0

v0.0.10

What's Changed

• Minor Fixes by @jcharkow in #134
• update for pyopenms 3.2.0 by @jcharkow in #138
• fix: errors in last PR by @jcharkow in #140
• Feature: Add Dependabot for automatic software updates by @jcharkow in #139
• deps: bump markupsafe from 2.1.5 to 3.0.0 by @dependabot in #144
• deps: bump jsonschema-specifications from 2023.12.1 to 2024.10.1 by @dependabot in #145
• deps: bump plotly from 5.18.0 to 5.24.1 by @dependabot in #143
• Feature: Add Ability to accept multiple result files by @jcharkow in #137
• Refactor/pyopenms viz no streamlit by @jcharkow in #151

New Contributors

• @dependabot made their first contribution in #144

Full Changelog: v0.0.9...v0.0.10

v0.0.9

What's Changed

• Patch/refactor plot peak picking by @jcharkow in #106
• fix: logo image display on windows by @singjc in #117
• Update/docs by @singjc in #118
• Test/add tests by @jcharkow in #114
• Test/plot tests by @jcharkow in #119
• Patch/gui load raw im example bug by @singjc in #122
• Patch/gui by @jcharkow in #124
• feature: add legend to features by @jcharkow in #126
• Patch/plotting toggle legend by @singjc in #123
• fix: infer names bug, no longer use filename by @singjc in #127
• docs: update docs for release by @jcharkow in #129
• Patch/update api by @jcharkow in #130
• patch MacOS bug by @singjc in #131
• fix: disable tkinter file selector for Mac by @singjc in #132
• add: button to terminate massdash by @singjc in #128
• add: check port, get free port is un available by @singjc in #133

Full Changelog: v0.0.8...v0.0.9

v0.0.8

Full Changelog: v0.0.7...v0.0.8

v0.0.7

What's Changed

• [TUTORIAL] quickstart jupyter notebook by @jcharkow in #51
• Plotting Bug fixes and new features by @jcharkow in #75
• Gauss smooth by @alhigaylan in #88
• Feature/sphinx tutorials by @jcharkow in #67
• [UPDATE] search results demo data url blob to raw by @singjc in #91
• Patch/dia test data by @singjc in #92
• Patch/home button by @singjc in #93
• Fix/test by @irahorecka in #95
• [FIX] error in conformer model by @jcharkow in #72
• [CHANGE] ui option name for feature file boundaries by @singjc in #99
• refactor: combine preprocessor with conformer by @jcharkow in #101
• Patch/peak boundary int by @singjc in #100
• fix: remove window_size arg from Conformer call by @singjc in #103
• Fix/test consolidation by @irahorecka in #107
• Bug/conformer preprocessor by @singjc in #109
• Bug/mrmpeakpicking none smoother by @singjc in #111

Full Changelog: v0.0.6...v0.0.7

v0.0.6

What's Changed

• Patch/get example data by @singjc in #77
• [FIX] Drop duplicate filename columns by @singjc in #76
• Refactor README by @irahorecka in #78
• [ADD] server_port arg by @singjc in #82
• Feature/tk filedialog by @singjc in #81
• Patch/theme logo switch by @singjc in #83

Full Changelog: v0.0.5...v0.0.6

v0.0.5

Full Changelog: v0.0.4...v0.0.5

v0.0.4

Add OpenSwath and DreamDIA tsv results in GernericLoader

Full Changelog: v0.0.3...v0.0.4

v0.0.3

Full Changelog: v0.0.2...v0.0.3