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Update technical document link to bioRxiv and refresh doc assets - #42

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erik-mingyang merged 6 commits into
Runchuan-BU:mainfrom
IveGotMagicBean:main
Apr 15, 2026
Merged

Update technical document link to bioRxiv and refresh doc assets#42
erik-mingyang merged 6 commits into
Runchuan-BU:mainfrom
IveGotMagicBean:main

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  • Updated technical document link to point to bioRxiv preprint
  • Updated tech_doc_card.png to latest version

@erik-mingyang
erik-mingyang merged commit f30f8e3 into Runchuan-BU:main Apr 15, 2026
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cheatthegod added a commit to cheatthegod/BioClaw that referenced this pull request Apr 20, 2026
Non-UI portion of local work (3 ahead commits on main, UI excluded
per author request).  Squashes:

  dbcbade "Add Typst report template system, improve SEC pipeline and
          plan mode"  (Runchuan Feng)
  956aaed "Add SEC report workflow and Biomni-style workspace"
          (Qingran Cai) — UI parts excluded; see below

Included (non-UI):
  container/skills/sec-report/              — SEC chromatography analysis
    SKILL.md, sec_pipeline.py, sec_report_common.py, sec_report_pdf.py,
    sec_report_typst.py, tests/{generate_test_data.py, run_test.sh}
  container/skills/report-template/         — Typst-based report engine
    SKILL.md, report_builder.py, templates/scientific_report.typ
  container/agent-runner/src/task-routing.ts  — SEC task auto-routing
  container/agent-runner/src/index.ts         — integrate task-routing
  container/Dockerfile                        — image tweaks for new skills
  src/ipc.ts                                  — plan-mode IPC messages
  tests/container-agent-runner/task-routing.test.ts
  vitest.config.ts                            — test infra
  docs/SEC_REPORT_WORKFLOW.zh-CN.md           — full workflow documentation
  README.zh-CN.md                             — reference the new workflow doc

Excluded (UI redesign work, kept local):
  src/channels/local-web/assets/{app.js,index.html,style.css}
  docs/BIOMNI_LAYOUT_REDESIGN_PLAN.zh-CN.md
  docs/desktop-app-design.md  (untracked)

Branch is based on origin/main (Runchuan-BU/BioClaw), so upstream's
recent tech-doc link / PDF-swap commits (PR Runchuan-BU#42 et al.) are already
included — README.zh-CN.md adds the SEC workflow reference on top
of upstream's tech-doc URL change.

Co-Authored-By: Runchuan Feng <runchuan@bu.edu>
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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2 participants