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Bump mistune from 3.2.1 to 3.3.0 in /SalishSeaTools/envs #207

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Merged
douglatornell merged 2 commits into from
Jul 13, 2026
Merged

Bump mistune from 3.2.1 to 3.3.0 in /SalishSeaTools/envs #207

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d787c32
Bump mistune from 3.2.1 to 3.3.0 in /SalishSeaTools/envs
dependabot[bot] Jul 10, 2026
e5a0cba
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 10, 2026
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2 changes: 1 addition & 1 deletion SalishSeaTools/envs/requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -105,7 +105,7 @@ MarkupSafe==3.0.3
matplotlib==3.10.8
matplotlib-inline==0.2.1
mdurl==0.1.2
mistune==3.2.1
mistune==3.3.0
more-itertools==10.8.0
munkres==1.1.4
mypy_extensions==1.1.0
Expand Down
23 changes: 11 additions & 12 deletions SalishSeaTools/salishsea_tools/evaltools.py
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Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@
import pandas as pd
import pytz
import xarray as xr
import cftime #Added for noleap exeption.
import cftime # Added for noleap exeption.

from salishsea_tools import geo_tools, places

Expand Down Expand Up @@ -232,7 +232,7 @@ def matchData(
)
for file_type in file_types
}

# Call a function to match model field values to the observation data using the specified method
data = _match_model_to_data(
method,
Expand All @@ -247,7 +247,7 @@ def matchData(
model_file_hours_res,
n_spatial_dims,
pre_indexed=pre_indexed,
nam_fmt = mod_nam_fmt
nam_fmt=mod_nam_fmt,
)
data.reset_index(drop=True, inplace=True)
return data
Expand Down Expand Up @@ -473,7 +473,7 @@ def _match_model_to_data(
model_file_hours_res,
n_spatial_dims,
pre_indexed=False,
nam_fmt = "nowcast"
nam_fmt="nowcast",
):
"""
Match model field values to the provided observational data using the specified method.
Expand Down Expand Up @@ -1012,12 +1012,11 @@ def _getTimeInd_bin(idt, ifid, torig, hpf=None):
if "time_centered_bounds" in ifid.variables.keys():
tlist = ifid.variables["time_centered_bounds"][:, :]
tc = ifid["time_counter"]
target_num = cftime.date2num(idt, units=tc.units, calendar=tc.calendar) #This way noleap runs also work
ih = [
iii
for iii, hhh in enumerate(tlist)
if hhh[1] > target_num][0]

target_num = cftime.date2num(
idt, units=tc.units, calendar=tc.calendar
) # This way noleap runs also work
ih = [iii for iii, hhh in enumerate(tlist) if hhh[1] > target_num][0]

else: # hacky fix because time_centered_bounds missing from post-processed daily files
nt = len(ifid.variables["time_counter"][:])
if "hours" in ifid.variables["time_counter"].units:
Expand Down Expand Up @@ -1237,7 +1236,7 @@ def index_model_files_flex(
t_0 = list()
t_n = list()
for ifl in paths:
if nam_fmt in ["nowcast","SHEM"]:
if nam_fmt in ["nowcast", "SHEM"]:
dates = re.findall(r"\d{8}", re.search(r"\d{8}_\d{8}", ifl)[0])
elif nam_fmt == "long":
dates = re.findall(r"\d{8}", re.search(r"\d{8}-\d{8}", ifl)[0])
Expand Down Expand Up @@ -3315,7 +3314,7 @@ def getChlNRatio(
"nmlfile must contain full namelist path or basedir and nam_fmt must be defined"
)
if basedir:
if nam_fmt in ["nowcast","SHEM"]:
if nam_fmt in ["nowcast", "SHEM"]:
nmlfile = os.path.join(basedir, idt.strftime("%d%b%y").lower(), nmlfile)
elif nam_fmt == "long":
nmlfile = os.path.join(basedir, nmlfile)
Expand Down