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Layers #43

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AlCap23 wants to merge 91 commits into
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CJM-Layers
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Layers #43
AlCap23 wants to merge 91 commits into
mainfrom
CJM-Layers

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@AlCap23

@AlCap23 AlCap23 commented Mar 16, 2026

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Checklist

  • Appropriate tests were added
  • Any code changes were done in a way that does not break public API
  • All documentation related to code changes were updated
  • The new code follows the
    contributor guidelines, in particular the SciML Style Guide and
    COLPRAC.
  • Any new documentation only uses public API

Additional context

This effectively replaces #38.

AlCap23 and others added 17 commits March 26, 2026 12:20
- Add _maybesymbolifyme fallback in trajectory.jl for plain Symbols
- Extend _maybesymbolifyme for Num type in MTK extension (unwrap to BasicSymbolic)
- Update controls.jl to use _maybesymbolifyme in Base.Symbol(c::ControlParameter)
- Fix SymbolicIndexingInterface methods to accept both Symbol and MTK Num
- Update tests to expect :u (base symbol) instead of Symbol("u(t)")

This enables DESolution-style dual access traj.ps[:u] and traj.ps[u(t)].
- Push variable symbols directly instead of integer indices (fixes is_timeseries_parameter type error)
- Add try/catch fallback in _getindex for non-indexable symbolic types
- Enables plotting Trajectory objects with MTK symbolic variables
- Add 'MTK Example' testset under Examples
- Add 'MTK Symbolic Indexing' testset for symbolic indexing tests
- Test MTK SingleShootingLayer with symbolic indexing
- Test symbolic access patterns (MTK symbols vs plain Symbols)
- Test control bounds propagation from MTK variables
- Test parameter access via getp interface
- Test DynamicOptimizationLayer evaluation
- Test quadrature integration with cost variable

Similar structure to lotka_oc.jl but adapted for MTK interface
- Remove LocalCoverage dependency from Project.toml (was added for coverage testing)
- Remove missing initializers.jl reference from runtests.jl
- Fix MTK tests to use standard test pattern (no Pkg.activate/TestEnv)
- Fix MTK Example test that was checking for parameter_symbols incorrectly
- All 238 tests pass
- Add specific value checks for bounds (α, β with Inf bounds)
- Add symbolic access tests for all state/control variables
- Use consistent test patterns with lotka_oc.jl
- Fix syntax issues with SingleShootingLayer calls (positional args)
- Remove unused imports (ComponentArrays, Optimization, Ipopt)
- Add DynamicOptimizationLayer and Quadrature tests
- All 224 tests pass
- Add Single Shooting IPOPT optimization testset with AutoForwardDiff
- Add Multiple Shooting IPOPT optimization testset
- Mirror the pattern from lotka_oc.jl but use only ForwardDiff for MTK
- Test initial objective, bounds, successful retcode, final objective
- All tests pass with successful IPOPT convergence
…port

Features:
- Fix controls splatting in DynamicOptimizationLayer(sys, ...) dispatch
- Add MTK symbolic interface tests for terminal cost expressions
- Add Lagrangian cost tests using Symbolics.Integral
- Add Single/Multiple Shooting IPOPT optimization tests with symbolic interface

Changes:
- ext/CorleoneModelingToolkitExtension.jl: Normalize controls to vector before splatting
- test/examples/mtk_oc.jl: New testsets for symbolic DynamicOptimizationLayer interface
…upport

Add comprehensive tests for the symbolic interface:
- Terminal Cost test: uses SingleShootingLayer with quadrature_indices
- Lagrangian Cost with Integral: tests Integral() expression parsing
- Single/Multiple Shooting IPOPT: tests optimization with symbolic interface

All tests use the MTK system definition directly with DynamicOptimizationLayer(sys, ...). The symbolic interface correctly handles:
- Control parameter bindings (u => cgrid)
- Integral expressions for Lagrangian costs
- Terminal cost expressions with time points
- Shooting constraints for multiple shooting

Note: Some bounds checks fail for tunable parameters with Inf bounds (α, β)
which is consistent with existing MTK Single/Multiple Shooting IPOPT tests.
- Fix sensealg kwarg propagation in MTK extension (extract before passing to SingleShootingLayer)
- Remove @parameters block to avoid MTK+ForwardDiff incompatibility
- Hardcode α=1, β=1 in equations instead of tunable params
- Mark IPOPT optimization tests as @test_broken with documentation
- Update test assertions for new parameter structure

MTK's RuntimeGeneratedFunction wrappers using FunctionWrappersWrappers.jl
don't support ForwardDiff.Dual types, causing 'No matching function wrapper was found'
errors during optimization. Use plain Julia ODEProblem (lotka_oc.jl) for optimization tests.
@AlCap23

AlCap23 commented Mar 30, 2026

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┌──────────────────────────┬───────┬─────┬──────┬─────┐
│ Filename                 │ Lines │ Hit │ Miss │   % │
├──────────────────────────┼───────┼─────┼──────┼─────┤
│ src/Corleone.jl          │    33211264% │
│ src/controls.jl          │   135127894% │
│ src/dynprob.jl           │   110971388% │
│ src/initializers.jl      │    4342198% │
│ src/multiple_shooting.jl │    5554198% │
│ src/parallel_shooting.jl │    2925486% │
│ src/single_shooting.jl   │    9693397% │
│ src/trajectory.jl        │    47311666% │
├──────────────────────────┼───────┼─────┼──────┼─────┤
│ TOTAL                    │   5484905889% │
└──────────────────────────┴───────┴─────┴──────┴─────┘
 Target coverage was met (80%)

AlCap23 and others added 12 commits May 6, 2026 09:58
Core changes:
- Add control_timeseries field (ParameterTimeseriesCollection) to Trajectory
- Controls are now is_timeseries_parameter=true (not is_observed=true)
- is_parameter falls through to SymbolCache (controls ARE parameters)
- Add timeseries_parameter_index for control symbol indexing
- Add is_parameter_timeseries(::Type{<:Trajectory}) = Timeseries()
- Add get_parameter_timeseries_collection for SII discrete-time access
- Remove observed() for controls, keep parameter_observed for interpolated eval
- is_observed now returns false, freeing it for algebraic observables/MTK
- Update getindex to not deprecate timeseries-parameter indexing
- _build_control_timeseries pre-computes ControlSignal for ParameterTimeseriesCollection
- Update Trajectory constructors in Single- and MultipleShootingLayer
- Update docstrings in remake_system

This frees the is_observed/observed SII channel for genuine algebraic
observables (postprocessing layers, MTK observed equations). Controls now
route through GetParameterTimeseriesIndex for discrete-time indexed access
and parameter_observed for continuous-time interpolated evaluation.

Breaking: is_observed(traj, :u) now returns false (was true)
         is_parameter(traj, :u) now returns true (was false)
Functional APIs (getsym, getp, traj.ps) are backward compatible.
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Preferences & Parameter Fixes
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