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Bump the all-julia-packages group across 2 directories with 12 updates#139

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Bump the all-julia-packages group across 2 directories with 12 updates#139
ChrisRackauckas merged 1 commit into
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Updates the requirements on Documenter, Evolutionary, NLSolversBase, Revise, Distributions, MLDatasets, StableRNGs, PyCall, SymPy, IJulia, Flux and Plots to permit the latest version.
Updates Documenter to 1.17.0

Release notes

Sourced from Documenter's releases.

v1.17.0

Added

  • The version selector now also preserves the anchor (hash) when switching between documentation versions. Additionally, the outdated/dev version warning banner now also tries to keep you on the same page (and position) when linking to the latest stable release. (#2880)
  • Added Remotes.Forgejo for specifying a Remote hosted on a Forgejo instance (such as codeberg.org). (#2857)
  • Doctests now default to the parser_for_module of the module that the docstring appears in, allowing modules that set their syntax version via Base.Experimental.@set_syntax_version to have their doctests parsed with the correct syntax automatically. Also added support for DocTestSyntax metadata and per-block syntax= attributes to explicitly specify a syntax version. (#2874)
  • Added a show_log keyword for Documenter.LaTeX to print LaTeX compiler logs to stdout when PDF compilation fails, and support for forcing this via DOCUMENTER_LATEX_SHOW_LOGS in CI environments. (#1697)
  • Added support for new features of the Markdown stdlib introduced in Julia 1.14, namely strike through, HTML blocks and inline HTML (this requires Julia 1.14+ and MarkdownAST 0.1.3).

Changed

  • reduced time complexity from O(n^2) to O(n) to improve the initial load time for search (#2875)
  • Git no longer displays a message about the default branch name when calling deploydocs(). (#2854)
  • Don't escape characters (such as ~) in URLs when writing LaTeX. (#2210)
  • Tweak the layout of the table of contents in LaTeX / PDF output so that for a document with 8 or more parts, the part number (VIII) does not overlap with the part title. (#2871)

Fixed

  • Fixed rendering of operator docstring bindings such as Base.:(:) and Base.:(==) in doc headers and indices. (#2844)

The changes are documented in the CHANGELOG.md file.

Diff since v1.16.1

Changelog

Sourced from Documenter's changelog.

Version [v1.17.0] - 2026-02-20

Added

  • The version selector now also preserves the anchor (hash) when switching between documentation versions. Additionally, the outdated/dev version warning banner now also tries to keep you on the same page (and position) when linking to the latest stable release. (#2880)
  • Added Remotes.Forgejo for specifying a Remote hosted on a Forgejo instance (such as codeberg.org). (#2857)
  • Doctests now default to the parser_for_module of the module that the docstring appears in, allowing modules that set their syntax version via Base.Experimental.@set_syntax_version to have their doctests parsed with the correct syntax automatically. Also added support for DocTestSyntax metadata and per-block syntax= attributes to explicitly specify a syntax version. (#2874)
  • Added a show_log keyword for Documenter.LaTeX to print LaTeX compiler logs to stdout when PDF compilation fails, and support for forcing this via DOCUMENTER_LATEX_SHOW_LOGS in CI environments. (#1697)
  • Added support for new features of the Markdown stdlib introduced in Julia 1.14, namely strike through, HTML blocks and inline HTML (this requires Julia 1.14+ and MarkdownAST 0.1.3).

Changed

  • reduced time complexity from O(n^2) to O(n) to improve the initial load time for search (#2875)
  • Git no longer displays a message about the default branch name when calling deploydocs(). (#2854)
  • Don't escape characters (such as ~) in URLs when writing LaTeX. (#2210)
  • Tweak the layout of the table of contents in LaTeX / PDF output so that for a document with 8 or more parts, the part number (VIII) does not overlap with the part title. (#2871)

Fixed

  • During cross-referencing find_object correctly locates the Documenter.Object associated with UnionAll method signatures. (#2836, #2889)
  • Fixed rendering of operator docstring bindings such as Base.:(:) and Base.:(==) in doc headers and indices. (#2844)

Version [v1.16.1] - 2025-11-21

Fixed

  • The -g is now passed to curl when checking links, to disable globbing, which could cause undesirable behavior when checking links containing characters like for example [, {, & or ?. (#2839, #2842)
  • Fixed insufficient paragraph spacing in HTML output for @docs blocks. ([#2845, #2847])
  • Don't expand details admonition by default. ([#2846, #2847])
  • Removed superfluous vertical space at end of @docs blocks. (#2849)

Version [v1.16.0] - 2025-11-14

Added

  • Added option treat_markdown_warnings_as_error which throws an error when encountering a markdown/interpolation warning (#2792, #2751)
  • Footnotes can now be previewed by hovering over the link. (#2080)
  • The version selector now attempts to stay on the same page when switching between documentation versions. If the page doesn't exist in the target version, it falls back to the version homepage. (#2801)
  • Allow named @eval blocks: such a block shares its execution context with all other @eval, @example, @repl and @setup blocks on the same page which use the same name. (#2074, #2812)

Changed

  • Page category is removed from the search index and now everything is in section category. (#2762, #2413)
  • Changed the docstring block accordions from a custom implementation to HTML details+summary tag. (#2772, #2773)
  • Improved the search tokenizer and custom trimmer to improve search results. (#1457, #2114, #2744)
  • Improved several warning/error messages to (more accurately) report the location (filename, line range) in which the warning/error originated. (#2426, #2752, #2793, #2803, #2809)
  • Warn/error if jldoctest starts with an empty line; or lacks empty line between two REPL prompts. (#2031, #2083, #2679, #2808)
  • The forcepush=true option to deploydocs now uses --force-with-lease instead of --force. (#2817)
  • Improved the generation of anchors for admonitions in HTML output to be more stable and e.g. not change due to changes of the internal representation across different Julia versions. (#2710)

... (truncated)

Commits

Updates Evolutionary to 0.11.2

Commits

Updates NLSolversBase to 8.0.0

Release notes

Sourced from NLSolversBase's releases.

v8.0.0

What's Changed

Full Changelog: JuliaNLSolvers/NLSolversBase.jl@v7.10.0...v8.0.0

Commits

Updates Evolutionary to 0.11.2

Commits

Updates Revise to 3.14.5

Release notes

Sourced from Revise's releases.

v3.14.5

Revise v3.14.5

Diff since v3.14.4

Merged pull requests:

Closed issues:

  • REPL coloring gets confused by non-julia modes (#755)
  • juliadir should probably not be cached during compile time (#835)
  • Revise tries to resolve bindings in unreachable method definitions (#954)
  • Revise somehow interacts with precompilation and brings some bindings into Main (#961)
  • "UndefVarError: [#161](https://github.com/timholy/Revise.jl/issues/161)#162 not defined" when doing any change in Pkg with Revise running (#964)
Changelog

Sourced from Revise's changelog.

NEWS

This file describes only major changes, and does not include bug fixes, cleanups, or minor enhancements.

Revise 3.13

  • Struct revision support (Julia 1.12+): Revise can now handle changes to struct definitions. When you modify a struct, Revise automatically re-evaluates the struct definition along with any methods or types that depend on it. (timholy/Revise.jl#894)

    For example, if you have:

    struct Inner
    value::Int
end
struct Outer
inner::Inner
end
print_value(o::Outer) = println(o.inner.value)

    And change Inner to:

    struct Inner
    value::Float64
    name::String
end

    Revise will redefine Inner, and also re-evaluate Outer (which uses Inner as a field type) and print_value (which references Outer in its signature).

    Note: This feature requires Julia 1.12+. However, Revise does not track implicit dependencies from type aliases or global bindings to struct definitions. For example, if you change MyVecType{T} = Vector{T} to AbstractVector{T}, a struct struct MyVec{T}; v::MyVecType{T}; end will not be automatically re-evaluated. As a workaround, you can manually call revise(MyModule) to force re-evaluation of all definitions in MyModule, which will pick up the new bindings.

  • Revise.dont_watch(pkg) and Revise.allow_watch(pkg) functions with Preferences.jl persistence. Direct modification of Revise.dont_watch_pkgs set is deprecated and will be removed in a future major version. (timholy/Revise.jl#976)

... (truncated)

Commits

Updates Distributions to 0.25.125

Release notes

Sourced from Distributions's releases.

v0.25.125

Distributions v0.25.125

Diff since v0.25.124

Merged pull requests:

Commits
  • cc1a9fa Add sufficient statistics and MLE for Chi and Chisq (#1997)
  • 46ef6a3 Fix BinomialTPESampler Stirling correction sign error (#2053)
  • da420cd Implementing Hypergeometric sampling to remove RFunctions dependency (#1994)
  • 196d79b Bump codecov/codecov-action from 5 to 6 (#2048)
  • 8c7dd0d Simplify pdf formula in SkewNormal docstring (#2046)
  • bd05c70 Bump julia-actions/cache from 2 to 3 (#2043)
  • aaa6f49 Add docstring for univariate gradlogpdf (#2042)
  • 71309bc Bump actions/checkout from 5 to 6 (#2037)
  • d90e7ab Fix R test references and make them reproducible (#2007)
  • f1ff9e8 minor numerical improvement to logpdf(::Skellam) (#2034)
  • Additional commits viewable in compare view

Updates MLDatasets to 0.7.21

Release notes

Sourced from MLDatasets's releases.

v0.7.21

MLDatasets v0.7.21

Diff since v0.7.20

Merged pull requests:

Commits

Updates StableRNGs to 1.0.4

Commits
  • fc6df37 copy-in Random.ltm52 which was deleted from Random (for shuffle) (#35)
  • dcc5201 add 1.9, 1.10, 1.11 to CI, and rm 1.4 on macOS (#28)
  • a584e78 Create dependabot.yml and update action versions (#31)
  • f1b00d7 Bump version (#34)
  • f626dcb import Random.Sampler (#30)
  • 147f522 Update badges on README.md (#27)
  • 18aa75f Fix method ambiguity error of shuffle! with AbstractArray{Bool} on Julia ...
  • 7e5c4a8 Fix streams of randn and randexp on Julia >= 1.11 (#22)
  • 9af20f9 add TagBot.yml file (#21)
  • d4f375f Add weekly CI run (#19)
  • Additional commits viewable in compare view

Updates PyCall to 1.96.4

Release notes

Sourced from PyCall's releases.

v1.96.4

PyCall v1.96.4

Diff since v1.96.3

Merged pull requests:

Commits

Updates SymPy to 2.3.3

Release notes

Sourced from SymPy's releases.

v2.3.3

SymPy v2.3.3

Diff since v2.3.2

Merged pull requests:

Closed issues:

  • Sympy throws on returning a tuple out of diophantine call (#561)
Commits

Updates IJulia to 1.34.4

Release notes

Sourced from IJulia's releases.

v1.34.4

IJulia v1.34.4

Diff since v1.34.3

  • Fixed removed undisplay method that broke PyPlot.withfig

Merged pull requests:

Commits
  • 8e17d35 version bump to 1.34.4 (#1244)
  • a73b7ac Update display.jl: restore 1-arg undisplay (used by PyPlot) (#1243)
  • 98d651c 🎨 Support JUPYTER_PLATFORM_DIRS env. var. on MacOS. (#1242)
  • bcf2422 Merge pull request #1240 from JuliaLang/macos
  • 6744a46 Revert to standard data directory on Mac
  • fafb4a1 Merge pull request #1239 from JuliaLang/JamesWrigley-patch-1
  • 58544ee Fix changelog formatting
  • 44f7c7c Merge pull request #1238 from arafune/fix-macos-jupyter-path
  • eb0382d Fix typo.
  • 3e6d9f0 Revert the previous commit to add 1.34.1 once again.
  • Additional commits viewable in compare view

Updates Flux to 0.16.10

Release notes

Sourced from Flux's releases.

v0.16.10

Flux v0.16.10

Diff since v0.16.9

Merged pull requests:

Closed issues:

  • Incorrect link on docs (#2380)
  • bad formatting for PairwiseFusion docstring (#2406)
  • Use Caching Allocator in train! (#2636)
  • all documented functions should be marked as public (#2638)
  • Can't install flux. (#2651)
  • GSoC 2026 Interest: RL Environments Project (#2663)
Changelog

Sourced from Flux's changelog.

Flux Release Notes

See also github's page for a complete list of PRs merged before each release.

Unreleased

  • Switch to ParallelTestRunner.jl for parallel test execution, replacing the previous test runner.

v0.16.8 (January 2025)

This release includes the following changes:

  • Added support in Flux.gradient and Flux.withgradient to alternative AD backends such as AutoEnzyme() and AutoMooncake().
  • The default init_score value for early_stopping has been set to Inf (instead of 0) in order to prevent unexpected behavior if the defaults were not modified.

v0.16.7 (10 December 2025)

This patch release includes:

  • Minor documentation fixes and housekeeping commits.
  • Compatibility updates for downstream packages.

v0.16.6 (8 December 2025)

This patch release includes:

  • Minor dependency bumps and CI updates.
  • Preparatory changes ahead of v0.16.7.

v0.16.5 (23 July 2025)

This release includes:

  • Fix typos in legacy tutorials documentation.([GitHub][2])
  • Bump compatibility for AMDGPU in weak dependencies.([GitHub][2])
  • Fix for unsafe_free! failure with certain CuArray configurations.([GitHub][2])

v0.16.4 (2 June 2025)

This release includes:

  • Fix missing imports in FluxMPIExt.([GitHub][1])
  • Add shape validation for convolution weight tensors.([GitHub][1])
  • Disable and fix intermittent Reactant tests.([GitHub][1])
  • Fix recurrent docstrings and pooling layer loading.([GitHub][1])
  • Small test updates and miscellaneous doc fixes.([GitHub][1])

v0.16.3 (6 February 2025)

This release includes:

... (truncated)

Commits
  • a2c6e5c Bump version from 0.16.9 to 0.16.10
  • 9eed341 Bump codecov/codecov-action from 5 to 6 (#2668)
  • 818ad1a CompatHelper: bump compat for cuDNN in [weakdeps] to 6, (keep existing compat...
  • 7bf1fbb CompatHelper: bump compat for CUDA in [weakdeps] to 6, (keep existing compat)...
  • fa41d85 fix number formatting for PairwiseFusion (#2669)
  • 0ab52e6 Implemented method for _show_leaflike(::Tuple{}) to handle parameters that ma...
  • cec0db7 fix AutoZygote gradient (#2665)
  • 9b2f550 fix AutoZygote gradient (#2664)
  • 1aed494 Bump dorny/paths-filter from 3.0.2 to 4.0.1 (#2661)
  • 2263075 fix test guard
  • Additional commits viewable in compare view

Updates Plots to 1.41.6

Release notes

Sourced from Plots's releases.

Plots-v1.41.6

What's Changed

Full Changelog: JuliaPlots/Plots.jl@Plots-v1.41.5+docs...Plots-v1.41.6

Changelog

Sourced from Plots's changelog.

Plots.jl NEWS

Unreleased

Features

  • GR backend: Add support for colorbar_ticks to customize tick positions and labels on colorbars (#3560)

Breaking changes

v2

  • deprecated backends pgfplots and pyplot removed
  • deprecated keyword orientation removed
  • backends are extensions now so the backend code must be explicitly loaded using import with the backend package, e.g. 
    using Plots
import GR # loads backend code

  • Types are no longer part of the Plots API this affects
    • Shape, which is now shape
  • The default label is now :none, use :auto to restore the previous behaviour
  • UnitfulExt changes:
    • The P_str macro is no longer provided as API. The intended goal was simply to not put units on axis labels which were "protected strings". To achieve this now, pass unitformat=:nounit.
    • The axis option unitformat=:none, unitformat=nothing, and unitformat=false previously printed the axis guide as string(label, " ", unit). That behavior is now moved to unitformat=:space, and :none, nothing, and false print the axis guide without units.

notes on release changes, ongoing development, and future planned work

NOTE: this file is deprecated, see the TagBot auto-generated changelogs instead

0.28.3

  • support generalized array interface
  • save to pdf, svg and eps in plotlyjs
  • fix for clims in line_z
  • optimize heatmap logic in gr

0.26.3

  • fix vline with dates
  • fix PyPlot logscale bug
  • avoid annotation clipping for PyPlot
  • allow plotting of Any vectors and 3D plotting again in convertToAnyVector
  • specify legend title font in GR and PyPlot

... (truncated)

Commits

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@dependabot
Bump the all-julia-packages group across 2 directories with 12 updates
5b975ef 
Updates the requirements on [Documenter](https://github.com/JuliaDocs/Documenter.jl), [Evolutionary](https://github.com/SciML/Evolutionary.jl), [NLSolversBase](https://github.com/JuliaNLSolvers/NLSolversBase.jl), [Revise](https://github.com/timholy/Revise.jl), [Distributions](https://github.com/JuliaStats/Distributions.jl), [MLDatasets](https://github.com/JuliaML/MLDatasets.jl), [StableRNGs](https://github.com/JuliaRandom/StableRNGs.jl), [PyCall](https://github.com/JuliaPy/PyCall.jl), [SymPy](https://github.com/JuliaPy/SymPy.jl), [IJulia](https://github.com/JuliaLang/IJulia.jl), [Flux](https://github.com/FluxML/Flux.jl) and [Plots](https://github.com/JuliaPlots/Plots.jl) to permit the latest version.

Updates `Documenter` to 1.17.0
- [Release notes](https://github.com/JuliaDocs/Documenter.jl/releases)
- [Changelog](https://github.com/JuliaDocs/Documenter.jl/blob/master/CHANGELOG.md)
- [Commits](JuliaDocs/Documenter.jl@v0.26.0...v1.17.0)

Updates `Evolutionary` to 0.11.2
- [Release notes](https://github.com/SciML/Evolutionary.jl/releases)
- [Commits](https://github.com/SciML/Evolutionary.jl/commits)

Updates `NLSolversBase` to 8.0.0
- [Release notes](https://github.com/JuliaNLSolvers/NLSolversBase.jl/releases)
- [Commits](JuliaNLSolvers/NLSolversBase.jl@v0.0.1...v8.0.0)

Updates `Evolutionary` to 0.11.2
- [Release notes](https://github.com/SciML/Evolutionary.jl/releases)
- [Commits](https://github.com/SciML/Evolutionary.jl/commits)

Updates `Revise` to 3.14.5
- [Release notes](https://github.com/timholy/Revise.jl/releases)
- [Changelog](https://github.com/timholy/Revise.jl/blob/master/NEWS.md)
- [Commits](timholy/Revise.jl@v0.0.1...v3.14.5)

Updates `Distributions` to 0.25.125
- [Release notes](https://github.com/JuliaStats/Distributions.jl/releases)
- [Commits](JuliaStats/Distributions.jl@0.2.2...v0.25.125)

Updates `MLDatasets` to 0.7.21
- [Release notes](https://github.com/JuliaML/MLDatasets.jl/releases)
- [Commits](JuliaML/MLDatasets.jl@v0.0.1...v0.7.21)

Updates `StableRNGs` to 1.0.4
- [Release notes](https://github.com/JuliaRandom/StableRNGs.jl/releases)
- [Commits](JuliaRandom/StableRNGs.jl@v0.1.0...v1.0.4)

Updates `PyCall` to 1.96.4
- [Release notes](https://github.com/JuliaPy/PyCall.jl/releases)
- [Commits](JuliaPy/PyCall.jl@v0.0.1...v1.96.4)

Updates `SymPy` to 2.3.3
- [Release notes](https://github.com/JuliaPy/SymPy.jl/releases)
- [Commits](JuliaPy/SymPy.jl@v0.2.2...v2.3.3)

Updates `IJulia` to 1.34.4
- [Release notes](https://github.com/JuliaLang/IJulia.jl/releases)
- [Commits](JuliaLang/IJulia.jl@v0.0.1...v1.34.4)

Updates `Flux` to 0.16.10
- [Release notes](https://github.com/FluxML/Flux.jl/releases)
- [Changelog](https://github.com/FluxML/Flux.jl/blob/master/NEWS.md)
- [Commits](FluxML/Flux.jl@v0.1.0...v0.16.10)

Updates `Plots` to 1.41.6
- [Release notes](https://github.com/JuliaPlots/Plots.jl/releases)
- [Changelog](https://github.com/JuliaPlots/Plots.jl/blob/v2/NEWS.md)
- [Commits](JuliaPlots/Plots.jl@Plots-v1.41.5+docs...Plots-v1.41.6)

---
updated-dependencies:
- dependency-name: Documenter
  dependency-version: 1.17.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Evolutionary
  dependency-version: 0.11.2
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: NLSolversBase
  dependency-version: 8.0.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Evolutionary
  dependency-version: 0.11.2
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Revise
  dependency-version: 3.14.5
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Distributions
  dependency-version: 0.25.125
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: MLDatasets
  dependency-version: 0.7.21
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: StableRNGs
  dependency-version: 1.0.4
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: PyCall
  dependency-version: 1.96.4
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: SymPy
  dependency-version: 2.3.3
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: IJulia
  dependency-version: 1.34.4
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Flux
  dependency-version: 0.16.10
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Plots
  dependency-version: 1.41.6
  dependency-type: direct:production
  dependency-group: all-julia-packages
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file julia Pull requests that update julia code labels Jun 3, 2026
@ChrisRackauckas-Claude ChrisRackauckas-Claude mentioned this pull request Jun 4, 2026
Merged
ChrisRackauckas added a commit that referenced this pull request Jun 4, 2026
@ChrisRackauckas
Merge pull request #140 from ChrisRackauckas-Claude/claude/documenter…
a7b06e8 
…-1.17-fix

Fix docs build for Documenter 1.17 (compat bump #139 follow-up)
@ChrisRackauckas ChrisRackauckas merged commit 5b975ef into master Jun 4, 2026
7 of 10 checks passed
@dependabot dependabot Bot deleted the dependabot/julia/docs/all-julia-packages-27dc8c0b02 branch June 4, 2026 14:37
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