Update Catalyst requirement from 15 to 15, 16.2 in the all-julia-packages group across 1 directory

[dependabot]

Updates the requirements on Catalyst to permit the latest version.
Updates Catalyst to 16.2.0

Release notes

Sourced from Catalyst's releases.

v16.2.0

Catalyst v16.2.0

Diff since v16.1.2

Merged pull requests:

• Bump codecov/codecov-action from 5 to 6 (#1453) (@​dependabot[bot])
• Bump compat for OrdinaryDiffEq v7 / SciMLBase v3 ecosystem (#1466) (@​ChrisRackauckas-Claude)
• refactor: ignore certain system metadata during serialization (#1475) (@​AayushSabharwal)
• Bump the all-julia-packages group across 2 directories with 4 updates (#1476) (@​dependabot[bot])
• Make docs compatible with Turing 0.45 (handles #1476) (#1477) (@​ChrisRackauckas-Claude)
• Centralize CI on SciML reusable workflows + Runic + typo fixes (#1478) (@​ChrisRackauckas-Claude)
• Bump the all-julia-packages group across 3 directories with 18 updates (#1479) (@​dependabot[bot])

Changelog

Sourced from Catalyst's changelog.

Breaking updates and feature summaries across releases

Unreleased (on master)

Catalyst 16.1

• Added use_jump_ratelaws keyword argument to ode_model, sde_model, hybrid_model, ODEProblem, SDEProblem, and HybridProblem. When set to true, both drift and diffusion terms use the jump/stochastic rate law (binomial propensities) instead of the ODE rate law (power-based). This gives the mathematically correct CLE derived from the CME when species populations are integers. Defaults to false for backward compatibility.

Catalyst 16.0

Catalyst 16 is a major release that transitions from ModelingToolkit (MT) v9 to ModelingToolkitBase (the base for ModelingToolkit v11); introduces unified hybrid model support for mixed ODE/SDE/Jump systems; supports user-provided coupled ODEs, SDEs, jump processes, and jump-diffusions; and modernizes the conversion and problem-creation API.

Please also see the ModelingToolkit NEWS.md for all the changes that have occurred in ModelingToolkit as part of v10 and v11, and which are now relevant for Catalyst users.

BREAKING: ModelingToolkitBase replaces ModelingToolkit

• Catalyst now depends on and re-exports ModelingToolkitBase instead of ModelingToolkit. This ensures Catalyst remains fully MIT-licensed after the library split that occurred in ModelingToolkit v11. ModelingToolkitBase provides the core symbolic system infrastructure (types, accessors, problem construction) that Catalyst needs. With this update, Catalyst moves from ModelingToolkit v9 to ModelingToolkitBase 1.12+ (part of ModelingToolkit v11).

  Most commonly used functions (unknowns, parameters, equations, @mtkcompile, etc.) are available through ModelingToolkitBase. However, if you relied on structural_simplify, now part of mtkcompile, for reducing models with algebraic equations, you may need to explicitly load ModelingToolkit to obtain equivalent levels of model reduction and optimization:

  using Catalyst
  using ModelingToolkit  # only if you need MTK-specific features not in MTKBase

  The version of mtkcompile in ModelingToolkitBase is less feature filled than in ModelingToolkit, but please be aware that the latter version now loads AGPL-licensed libraries that may impose additional restrictions on your code.

BREAKING: Conversion functions renamed

... (truncated)

Commits

• 3c24a17 Update Project.toml
• 08e33b1 Merge pull request #1479 from SciML/dependabot/julia/all-julia-packages-08a47...
• 2466e1f Merge branch 'master' into dependabot/julia/all-julia-packages-08a474db6d
• dc25874 Merge pull request #1453 from SciML/dependabot/github_actions/codecov/codecov...
• 52df5c4 Bump the all-julia-packages group across 3 directories with 18 updates
• a61242f Merge pull request #1477 from ChrisRackauckas-Claude/dependabot-turing-0.45-d...
• 7040da1 Merge branch 'master' into dependabot-turing-0.45-doc-compat
• 5111190 Merge pull request #1478 from ChrisRackauckas-Claude/centralize-ci
• 2c03cb7 Drop Runic reformatting and check from this PR
• 64c8b0e Centralize CI on SciML reusable workflows; apply Runic + fix typos
• Additional commits viewable in compare view

[dependabot]

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