feat: continuous-time reservoirs via RCODEReservoirExt

Project.toml

@@ -1,6 +1,6 @@
 name = "ReservoirComputing"
 uuid = "7c2d2b1e-3dd4-11ea-355a-8f6a8116e294"
-version = "0.12.23"
+version = "0.12.24"
 authors = ["Francesco Martinuzzi"]
 
 [deps]
@@ -17,33 +17,39 @@ WeightInitializers = "d49dbf32-c5c2-4618-8acc-27bb2598ef2d"
 
 [weakdeps]
 CellularAutomata = "878138dc-5b27-11ea-1a71-cb95d38d6b29"
+DataInterpolations = "82cc6244-b520-54b8-b5a6-8a565e85f1d0"
 LIBSVM = "b1bec4e5-fd48-53fe-b0cb-9723c09d164b"
 LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
 MLJLinearModels = "6ee0df7b-362f-4a72-a706-9e79364fb692"
+SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [extensions]
 RCCellularAutomataExt = "CellularAutomata"
 RCLIBSVMExt = "LIBSVM"
 RCLinearSolveExt = "LinearSolve"
 RCMLJLinearModelsExt = "MLJLinearModels"
+RCODEReservoirExt = ["SciMLBase", "DataInterpolations"]
 RCSparseArraysExt = "SparseArrays"
 
 [compat]
 ArrayInterface = "7.19.0"
 CellularAutomata = "0.0.6"
 ConcreteStructs = "0.2.3"
+DataInterpolations = "6, 7, 8"
 DifferentialEquations = "7.16.1, 8"
 LIBSVM = "0.8"
 LinearAlgebra = "1.10"
 LinearSolve = "3.57.0"
 LuxCore = "1.3.0"
 MLJLinearModels = "0.9.2, 0.10"
-NNlib = "0.9.26"
-PrecompileTools = "1"
+NNlib = "0.9.30"
+OrdinaryDiffEq = "6"
+PrecompileTools = "1.2"
 Random = "1.10"
 Reexport = "1.2.2"
 SafeTestsets = "0.1"
+SciMLBase = "2.51, 3"
 SciMLTesting = "1"
 SparseArrays = "1.10"
 Static = "1.2.0"
@@ -53,14 +59,17 @@ WeightInitializers = "1.0.5"
 julia = "1.10"
 
 [extras]
+DataInterpolations = "82cc6244-b520-54b8-b5a6-8a565e85f1d0"
 DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa"
 LIBSVM = "b1bec4e5-fd48-53fe-b0cb-9723c09d164b"
 MLJLinearModels = "6ee0df7b-362f-4a72-a706-9e79364fb692"
+OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
 SafeTestsets = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"
+SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 SciMLTesting = "09d9d899-5365-40a9-917a-5f67fddea283"
 SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [targets]
-test = ["Test", "SafeTestsets", "SciMLTesting", "DifferentialEquations", "MLJLinearModels", "LIBSVM", "Statistics", "SparseArrays"]
+test = ["Test", "SafeTestsets", "SciMLTesting", "DataInterpolations", "DifferentialEquations", "MLJLinearModels", "LIBSVM", "OrdinaryDiffEq", "SciMLBase", "SparseArrays", "Statistics"]

docs/Project.toml

@@ -1,6 +1,8 @@
 [deps]
 CellularAutomata = "878138dc-5b27-11ea-1a71-cb95d38d6b29"
 ConcreteStructs = "2569d6c7-a4a2-43d3-a901-331e8e4be471"
+DataInterpolations = "82cc6244-b520-54b8-b5a6-8a565e85f1d0"
+DelayDiffEq = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb"
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 DocumenterCitations = "daee34ce-89f3-4625-b898-19384cb65244"
 DocumenterInterLinks = "d12716ef-a0f6-4df4-a9f1-a5a34e75c656"
@@ -10,24 +12,30 @@ LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
 MLJLinearModels = "6ee0df7b-362f-4a72-a706-9e79364fb692"
 OrdinaryDiffEqAdamsBashforthMoulton = "89bda076-bce5-4f1c-845f-551c83cdda9a"
+OrdinaryDiffEqTsit5 = "b1df2697-797e-41e3-8120-5422d3b24e4a"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 ReservoirComputing = "7c2d2b1e-3dd4-11ea-355a-8f6a8116e294"
+SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 
 [compat]
 CellularAutomata = "0.0.6"
 ConcreteStructs = "0.2"
+DataInterpolations = "6, 7, 8"
+DelayDiffEq = "6"
 Documenter = "1"
 DocumenterCitations = "1"
 DocumenterInterLinks = "1"
 JLD2 = "0.6"
-OrdinaryDiffEqAdamsBashforthMoulton = "2"
-LinearSolve = "3"
 LIBSVM = "0.8"
+LinearSolve = "3"
 MLJLinearModels = "0.10"
+OrdinaryDiffEqAdamsBashforthMoulton = "2"
+OrdinaryDiffEqTsit5 = "1, 2"
 Plots = "1"
 ReservoirComputing = "0.12.0"
+SciMLBase = "2.51, 3"
 Static = "1"
 StatsBase = "0.34.4"

docs/pages.jl

@@ -4,6 +4,7 @@ pages = [
     "Tutorials" => Any[
         "Building a model from scratch" => "tutorials/scratch.md",
         "Chaos forecasting with an ESN" => "tutorials/lorenz_basic.md",
+        "Continuous-time reservoirs from a SciMLProblem" => "tutorials/sciml_reservoir.md",
         "Fitting a Next Generation Reservoir Computer" => "tutorials/ngrc.md",
         "Deep Echo State Networks" => "tutorials/deep_esn.md",
         "Training Reservoir Computing Models" => "tutorials/train.md",

docs/src/api/layers.md

@@ -36,24 +36,21 @@
     LIFESNCell
 ```
 
-## Continuous-time reservoirs
+## Wrappers
 
 ```@docs
-    AbstractSciMLProblemReservoir
-    SciMLProblemReservoir
+    LocalInformationFlow
 ```
 
+## Continuous-Time Reservoirs
+
 ```@docs
+    AbstractSciMLProblemReservoir
+    SciMLProblemReservoir
     AbstractSampler
     TerminalStateSampling
 ```
 
-## Wrappers
-
-```@docs
-    LocalInformationFlow
-```
-
 ## Reservoir computing with cellular automata
 
 ```@docs