CYTOGLO (CYTOmetry Gating & LOgical post-processsing) is a novel shiny app for the elaboration of the CytOF files. From the raw .fcs files is it possibile to apply a PeacoQC filtering, a customized gating and include panel files and metadata files in order to create a final SingleCellExperiment object. From this object you can perform clustering, dimensionality reduction and differential expression analysis.
You can install the development version of {CYTOGLO} like so:
devtools::install_github("ShinyFabio/CYTOGLO")You can launch the application by running:
CYTOGLO::run_app()