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Bump synapseclient from 2.5.1 to 4.1.1 in /conda/sage-bionetworks#14

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Bump synapseclient from 2.5.1 to 4.1.1 in /conda/sage-bionetworks#14
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@dependabot dependabot bot commented on behalf of github Mar 1, 2024

Bumps synapseclient from 2.5.1 to 4.1.1.

Release notes

Sourced from synapseclient's releases.

v4.1.1

Highlights

  • New Downloading Data in Bulk Tutorial
  • Downloading Files Troubleshooting Improvement
    • Improved error logging for when users are downloading files using commands like get-download-list from Synapse.

What's Changed

Full Changelog: Sage-Bionetworks/synapsePythonClient@v4.1.0...v4.1.1

v4.1.0

Highlights

  • New Interfaces:

    • Combines data and behavior into a single class, simplifying the understanding and usage of the system's models.
    • New Interface: Introduced a revamped interface in the Synapse Python Client, shifting from a functional programming approach to an object-oriented one.
    • Enhanced Developer Experience: This change highlights much needed quality of life updates for developers. Improved autocomplete, hoverdocs, and examples in docstrings provide a significantly better coding experience.
    • Asyncio Support: Introduced support for asyncio, enabling more efficient use of system resources and enhancing performance for IO-bound tasks.
    • Extensibility: Laying the foundation for an extensible platform, facilitating easier addition of new features, and improvements to the Synapse Python Client.

  • synapseutils.walk Improvement:

    • Improved performance for synapseutils.walk.

  • Pandas Range Expansion:

    • Expanded pandas range to >=1.5, <3.0.

  • Version Notation Support:

    • Using syn123.version notation is now supported with syn.get, synapseutils.syncFromSynapse, and syn.setProvenance. This enhances consistency in version management across various activities.

What's Changed

... (truncated)

Changelog

Sourced from synapseclient's changelog.

4.1.1 (2024-02-28)

Highlights

  • New Downloading Data in Bulk Tutorial
  • Downloading Files Troubleshooting Improvement
    • Improved error logging for when users are downloading files using commands like get-download-list from Synapse.

Bug Fixes

  • [SYNPY-1443] - Storing container without retrieving it before setting files/folder breaks
  • [SYNPY-1445] - Improve error handling when unable to download file

Stories

  • [SYNPY-1383] - Downloading data in bulk documentation
  • [SYNPY-1442] - Log exception when get_download_list fails

4.1.0 (2024-02-21)

Highlights

  • New Interfaces:

    • Combines data and behavior into a single class, simplifying the understanding and usage of the system's models. Review the available synchronous and asynchronous models.
    • New Interface: Introduced a revamped interface in the Synapse Python Client, shifting from a functional programming approach to an object-oriented one.
    • Enhanced Developer Experience: This change highlights much needed quality of life updates for developers. Improved autocomplete, hoverdocs, and examples in docstrings provide a significantly better coding experience.
    • Asyncio Support: Introduced support for asyncio, enabling more efficient use of system resources and enhancing performance for IO-bound tasks.
    • Extensibility: Laying the foundation for an extensible platform, facilitating easier addition of new features, and improvements to the Synapse Python Client.

  • synapseutils.walk Improvement:

    • Improved performance for [synapseutils.walk][].

  • Pandas Range Expansion:

    • Expanded pandas range to >=1.5, <3.0.

  • Version Notation Support:

    • Using syn123.version notation is now supported with [syn.get][synapseclient.Synapse.get], [synapseutils.syncFromSynapse][], and [syn.setProvenance][synapseclient.Synapse.setProvenance]. This enhances consistency in version management across various activities.

Bug Fixes

  • [SYNPY-448] - synapseutils.changeFileMetaData should allow changing Synapse name (like web client) for consistency
  • [SYNPY-1253] - syn.store(forceVersion=False) created new versions of the same file
  • [SYNPY-1398] - syncToSynapse doesn't recognize a "valid" provenance synapse id
  • [SYNPY-1412] - Issue importing synapseutils in notebook

Stories

  • [SYNPY-1326] - Update pandas dependency to support pandas 2.1
  • [SYNPY-1344] - Implement 'Activity' model into OOP
  • [SYNPY-1347] - Implement 'Team' model into OOP
  • [SYNPY-1348] - Implement 'UserProfile' model into OOP
  • [SYNPY-1401] - Avoid repeatedly calling syn.get in _helpWalk
  • [SYNPY-1414] - Finish 'Project' OOP model
  • [SYNPY-1415] - Finish 'Folder' OOP model

... (truncated)

Commits
  • 31d0906 version v4.1.1 docs
  • 046dff0 update version v4.1.1
  • 647ae52 Raise exception on HTTP error when retrieving file from storage location (#1074)
  • 9753472 [SYNPY-1442] Log update to capture exception when download-list fails (#1071)
  • 75f15e2 SYNPY-1443: Correct which fields are merged only if there is a change (#1072)
  • 25930cc [SYNPY-1383] Downloading data in bulk tutorial (#1070)
  • c9ea919 Merge branch 'master' into develop
  • b9971ee regen pipfile.lock for dependabot alert (#1069)
  • 5a45ac8 version v4.1.0 docs
  • 329849d [SYNPY-1414] Project model finishing touches (#1067)
  • Additional commits viewable in compare view

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@dependabot
Bump synapseclient from 2.5.1 to 4.1.1 in /conda/sage-bionetworks
22a1ed6 
Bumps [synapseclient](https://github.com/Sage-Bionetworks/synapsePythonClient) from 2.5.1 to 4.1.1.
- [Release notes](https://github.com/Sage-Bionetworks/synapsePythonClient/releases)
- [Changelog](https://github.com/Sage-Bionetworks/synapsePythonClient/blob/develop/docs/news.md)
- [Commits](Sage-Bionetworks/synapsePythonClient@v2.5.1...v4.1.1)

---
updated-dependencies:
- dependency-name: synapseclient
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Mar 1, 2024
@dependabot dependabot bot mentioned this pull request Mar 1, 2024
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