PedCardio study definition

LLMonFHIR.xcodeproj/xcshareddata/xcschemes/LLMonFHIR.xcscheme

@@ -110,7 +110,7 @@
             isEnabled = "NO">
          </CommandLineArgument>
          <CommandLineArgument
-            argument = "--mode study:edu.stanford.LLMonFHIR.spineAI"
+            argument = "--mode study:edu.stanford.LLMonFHIR.pedCardioStudy"
             isEnabled = "NO">
          </CommandLineArgument>
       </CommandLineArguments>

LLMonFHIR/FHIRInterpretation/UserStudy/QuestionnaireResponses+Summary.swift

@@ -152,7 +152,7 @@ extension QuestionnaireResponses.ImageAnnotation {
             let pipelineExplanation = """
             You operate as part of an image analysis pipeline, where an image annotated by a user is interpreted using an LLM.
             The user was presented an image, in an iOS app, and asked to draw onto the image, to annotate (highlight) regions where a certain condition is true
-            (e.g. "mark all areas where you feel pain in red").
+            (e.g., "mark all areas where you feel pain in red").
 
             The pipeline is as follows:
             1. Base image description:
@@ -173,7 +173,6 @@ extension QuestionnaireResponses.ImageAnnotation {
                     - the output from step 2 (the textual description of the annotated/highlighted image)
                     - the user's question
                 - output: a response to the user's question, taking into account the context generated by step 2, and other context passed along.
-
             """
             let baseImageExplanation: String = try await runner.oneShot(with: schema, context: [
                 LLMContextEntity(

LLMonFHIR/FHIRInterpretation/UserStudy/UserStudyChatToolbar.swift

@@ -67,7 +67,7 @@ struct UserStudyChatToolbar: ToolbarContent {
                 Button("No", role: .cancel) {}
             },
             message: {
-                Text("Do you want to continue?")
+                Text("Do you want to leave the chat?")
             }
         )
     }

LLMonFHIR/Helper/BottomSheet.swift

@@ -19,7 +19,7 @@ struct BottomSheet<Content: View>: View {
             ScrollView {
                 content
                     .onHeightChange {
-                        height = $0 + 50
+                        height = $0 + 100
                     }
             }
         }

LLMonFHIR/Resources/Localizable.xcstrings

@@ -256,12 +256,11 @@
       "comment" : "A button label that dismisses an onboarding hint.",
       "isCommentAutoGenerated" : true
     },
-    "Do you want to continue?" : {
-      "comment" : "A message displayed in a confirmation dialog when the user taps the \"Continue\" button in the toolbar.",
-      "isCommentAutoGenerated" : true
-    },
     "Do you want to end the chat and complete your participation in the study?" : {
 
+    },
+    "Do you want to leave the chat?" : {
+
     },
     "Documents" : {
       "comment" : "A label displayed above the user's documents.",

LLMonFHIR/Supporting Files/UserStudyConfig.plist

@@ -58,6 +58,15 @@
 			<key>reportEmail</key>
 			<string></string>
 		</dict>
+		<key>edu.stanford.LLMonFHIR.pedCardioStudy</key>
+		<dict>
+			<key>openAIAPIKey</key>
+			<string></string>
+			<key>openAIEndpoint</key>
+			<string>firebase-function:chat</string>
+			<key>reportEmail</key>
+			<string></string>
+		</dict>
 	</dict>
 </dict>
 </plist>

LLMonFHIRShared/Package.swift

@@ -26,6 +26,7 @@ let package = Package(
         .package(url: "https://github.com/StanfordSpezi/SpeziFoundation.git", from: "2.7.2"),
         .package(url: "https://github.com/apple/FHIRModels.git", .upToNextMajor(from: "0.7.0")),
         .package(url: "https://github.com/apple/swift-argument-parser.git", from: "1.7.0"),
+        .package(url: "https://github.com/apple/swift-algorithms.git", from: "1.2.1"),
         .package(url: "https://github.com/StanfordSpezi/SpeziLLM.git", from: "0.13.8"),
         .package(url: "https://github.com/StanfordSpezi/SpeziStorage.git", from: "2.1.4"),
         .package(url: "https://github.com/StanfordSpezi/SpeziFHIR.git", from: "0.10.0")
@@ -39,7 +40,8 @@ let package = Package(
                 .product(name: "SpeziLLM", package: "SpeziLLM"),
                 .product(name: "SpeziLLMOpenAI", package: "SpeziLLM"),
                 .product(name: "SpeziLocalStorage", package: "SpeziStorage"),
-                .product(name: "SpeziFHIR", package: "SpeziFHIR")
+                .product(name: "SpeziFHIR", package: "SpeziFHIR"),
+                .product(name: "Algorithms", package: "swift-algorithms")
             ],
             resources: [
                 .copy("Resources/Synthetic Patients")

LLMonFHIRShared/Sources/LLMonFHIRShared/ResourceBundle.swift

@@ -69,7 +69,7 @@ extension ModelsR4.Bundle {
                 do {
                     bundle = try JSONDecoder().decode(ModelsR4.Bundle.self, from: Data(contentsOf: url))
                 } catch {
-                    Self.logger.warning("Skipping FHIR bundle at \(url.path) (unable to decode): \(error)")
+                    print("Skipping FHIR bundle at \(url.path) (unable to decode): \(error)")
                     continue
                 }
                 if let patientName = bundle.singlePatient?.fullName {
@@ -87,7 +87,7 @@ extension ModelsR4.Bundle {
                 }
             }
             for (name, urls) in allBundlesByPatientName where urls.count > 1 {
-                Self.logger.warning("Found multiple FHIR bundles with same patient name '\(name)':\n\(urls.map { "- \($0.path)" }.joined(separator: "\n"))")
+                print("Found multiple FHIR bundles with same patient name '\(name)':\n\(urls.map { "- \($0.path)" }.joined(separator: "\n"))")
             }
         }
     }