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@StatFunGen

StatFunGen

where statistical genetics converges with functional genomics

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  1. xqtl-protocol xqtl-protocol Public

    Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium

    Jupyter Notebook 56 52

  2. pecotmr pecotmr Public

    Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.

    R 39 21

  3. colocboost colocboost Public

    R package implementing multi-context colocalization analysis method for molecular QTL and GWAS studies

    R 17 3

  4. statgen-primer statgen-primer Public

    Notes on the statistics background for statistical genetics trainees

    Jupyter Notebook 15 1

  5. statgen-advanced statgen-advanced Public

    Notes on advanced statistical genetics topics focusing on intuition and modeling choices of methods

    Shell 6 1

  6. susieR susieR Public archive

    Forked from stephenslab/susieR

    R package for "sum of single effects" regression, version 2.0

    R 3

Repositories

Showing 10 of 16 repositories
  • P8149_2026_vignettes Public

    Companion vignettes for BIST P8149: Human Population Genetics at Columbia University

    StatFunGen/P8149_2026_vignettes's past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Sep 28, 2026
  • xqtl-resources Public

    FunGen-xQTL resources navigation

    StatFunGen/xqtl-resources's past year of commit activity
    Jupyter Notebook 2 MIT 11 1 1 Updated Sep 28, 2026
  • pecotmr Public

    Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.

    StatFunGen/pecotmr's past year of commit activity
    R 39 21 5 2 Updated Sep 28, 2026
  • xqtl-protocol Public

    Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium

    StatFunGen/xqtl-protocol's past year of commit activity
    Jupyter Notebook 56 MIT 52 73 (5 issues need help) 2 Updated Sep 28, 2026
  • mmcloud Public

    Utilities to manage jobs on MMCloud from MemVerge Inc

    StatFunGen/mmcloud's past year of commit activity
    Python 0 MIT 7 1 0 Updated Sep 28, 2026
  • colocboost Public

    R package implementing multi-context colocalization analysis method for molecular QTL and GWAS studies

    StatFunGen/colocboost's past year of commit activity
    R 17 3 1 0 Updated Sep 28, 2026
  • StatFunGen/xQTL-AD-Loci-Explore's past year of commit activity
    R 0 1 0 1 Updated Sep 24, 2026
  • pixi-setup Public

    Default software packages installation on PC, Mac, HPC and cloud via pixi

    StatFunGen/pixi-setup's past year of commit activity
    Python 1 MIT 5 2 1 Updated Sep 9, 2026
  • qQTLR Public
    StatFunGen/qQTLR's past year of commit activity
    R 1 1 0 2 Updated Sep 4, 2026
  • mfsusieR Public

    mfSuSiE implementation using susieR backbone

    StatFunGen/mfsusieR's past year of commit activity
    R 2 1 4 3 Updated Aug 16, 2026

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