Skip to content

match/mismatch accuracy on simulations#2

Open
emdann wants to merge 11 commits intomainfrom
simulations
Open

match/mismatch accuracy on simulations#2
emdann wants to merge 11 commits intomainfrom
simulations

Conversation

@emdann
Copy link
Member

@emdann emdann commented Nov 28, 2022

Added notebook with:

  • functions to split dataset in reference and query simulating mismatch (deletions/insertions) in the query, of different lengths and starts
  • Code to compute "match prediction accuracy" (i.e. in which fraction of bins does the alignment correctly identify a match or a mismatch?)
  • Test on pancreas dataset using 5 genes picked from the CellRank paper.

@emdann
Copy link
Member Author

emdann commented Dec 12, 2022

Insertion/deletion accuracy results are saved in:

/nfs/team205/ed6/bin/Genes2Genes/notebooks/data/match_accuracy_pancreas.insertion.csv
/nfs/team205/ed6/bin/Genes2Genes/notebooks/data/match_accuracy_pancreas.deletion.csv

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants