ENH: implement the hierarchical clustering analysis of within-scanner SC reliability#560
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celprov wants to merge 24 commits intoTheAxonLab:mkdocsfrom
Open
ENH: implement the hierarchical clustering analysis of within-scanner SC reliability#560celprov wants to merge 24 commits intoTheAxonLab:mkdocsfrom
celprov wants to merge 24 commits intoTheAxonLab:mkdocsfrom
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… to be more noisy
…similarity/variability between SC matrices from different sessions
…y/variability between SC matrices from different sessions
…similarity/variability between SC matrices from different sessions
…e pre-registered that we would use scikit-learn, thus I implemented the clustering code similarly to how it is done in clustering the carpetplot in MRIQC
…king yet but anyway we need to wait to have the real SC matrices to correctly match the confounds value with SC matrices
…ccording to confound factor
…an reuse it across different analyses separated into different jupyter notebooks
… to be more noisy
…similarity/variability between SC matrices from different sessions
…y/variability between SC matrices from different sessions
…similarity/variability between SC matrices from different sessions
…e pre-registered that we would use scikit-learn, thus I implemented the clustering code similarly to how it is done in clustering the carpetplot in MRIQC
…king yet but anyway we need to wait to have the real SC matrices to correctly match the confounds value with SC matrices
…ccording to confound factor
…an reuse it across different analyses separated into different jupyter notebooks
…th SC matrices later) enh: load confounds and plot the dendogram and tSNE results coloring by factor values
…v/hcph-sops into enh/within_scanner_sc_reliability
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I have implemented the analyses we promised under the section "hierarchical clustering analysis of within-scanner SC reliability" of our registered report.
For now, the code runs on simulated SC matrices or on the FC matrices loaded from HCPh.
Specifically, I implemented: