Feature/ems paper final submission tweaks#51
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…` and `ems` subdirectories
…ks. ems paper makefile compiles `paper.tex`. good progress.
…ion example (to master examples library and then to ems paper repro script list)
…un without errors and give mostly sane results) and integrated these into the text. updated readiness checklist and are basically at a soft "full green light" status (but weak). first complete draft now (no missing pieces). about to start a first round of critical review and improvements.
…able and text (temp placeholder numbers for Woodstock but real WS3 numbers).
…ods in Woodstock input and output files". Messy. Not quite there yet, but close now.
Added everything.txt and tsa24_clipped.rep report files. Updated .act, .are, .run, and .seq files with new parameters, corrected values, and revised scheduling and reporting outputs for the TSA24 clipped model.
Uncommented and configured growing stock output in tsa24_clipped.out, added growing_stock values to everything.txt, and updated file timestamps. This change allows tracking of growing stock across periods in the TSA24 clipped model.
…grate FAIR readiness table into repro artifacts and paper
…cbm linkage induced by recent inventory method behaviour tweak to ensure woodstock parity
…ecent tweak to inventory compile logic (needed to ensure woodstock logic parity). Good to go now to PR and lock in!
…ap out placeholder figure 1 workflow diagram with new prisma-based version
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Lots of little things. Ready to submit to EMS now, so merging back into dev branch before doing that.