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docs: Weekly AI README upgrade — Getting Started / Installation #86

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Expand Up @@ -127,6 +127,23 @@ server <- function(input, output, session) {
shinyApp(ui, server)
```

### Filter Subnetwork by Context

Use `filterSubnetworkByContext` to filter a subnetwork by contextual relevance using PubMed abstracts.

```r
# Example nodes and edges
nodes <- data.frame(id = c("A", "B", "C"))
edges <- data.frame(source = c("A", "B"), target = c("B", "C"), interaction = c("activation", "inhibition"))

# Define query and filter
query <- c("DNA damage", "repair")
filtered_subnetwork <- filterSubnetworkByContext(nodes, edges, query = query, method = "tag_count", cutoff = 1)

print(head(filtered_subnetwork$nodes))
print(head(filtered_subnetwork$edges))
```

## License
This package is distributed under the [Artistic-2.0](https://opensource.org/licenses/Artistic-2.0) license. However, its dependencies may have different licenses.

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