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Update functions r-helper.R to store files as parquet instead of tsv

Status: Open.

#102 In alevax/pyviper;

· alexanderlewis99 opened on Dec 18, 2024

Add FindTopPathways function (equivalent of FindTopMRs)

Status: Open.

#99 In alevax/pyviper;

· alexanderlewis99 opened on Oct 9, 2024

Updating plotting: gExpr and VIPER alternate for each gene or are grouped

Status: Open.

#98 In alevax/pyviper;

· alexanderlewis99 opened on Sep 25, 2024

Heatmap - filter TFs, CoTFs, Sig, Surf

Status: Open.

#96 In alevax/pyviper;

· alexanderlewis99 opened on Sep 22, 2024

Plotting function - filter clusters

Status: Open.

#95 In alevax/pyviper;

· alexanderlewis99 opened on Sep 22, 2024

Heatmap & MR Option: Only positives option

Status: Open.

#94 In alevax/pyviper;

· alexanderlewis99 opened on Sep 22, 2024

Add SCTransform as an option

Status: Open.

#93 In alevax/pyviper;

· alexanderlewis99 opened on Sep 21, 2024

Integration of ARACNe-3 and PyViper with metacells: format conversion or direct use?

Status: Open.

#92 In alevax/pyviper;

· Kleinzhang99 opened on Sep 11, 2024

Add silhouette score plot at the top of the pyviper.pl.mrs

Status: Open.

#90 In alevax/pyviper;

· alexanderlewis99 opened on Sep 10, 2024

NaRnEA conflict with Pandas 3.0

Status: Open.

#88 In alevax/pyviper;

· LucaZanella15 opened on Aug 21, 2024

Add MR-cluster visualization from OncoLoop

Status: Open.

#85 In alevax/pyviper;

· alexanderlewis99 opened on Jul 23, 2024

Update Consensus network code

Status: Open.

#84 In alevax/pyviper;

· alexanderlewis99 opened on Jul 11, 2024