Contains code that process mitgcm output for the EQUINOx project
-
datarmor/ : code for launching
-
shallow_equinox/ : utils, preprocessing and postprocessing
-
doc/ : conda and git info
Needs update
All scripts require python librairies that may be installed with conda according to the following instructions here
Dependencies
Needs update
After having installed all libraries, and cloned this repository, go into mit_equinox/datarmor.
./launch-jlab.sh
Follow instructions that pop up from there.
The spin up of dask relies on dask-jobqueue:
from dask_jobqueue import PBSCluster
local_dir = os.getenv('TMPDIR')
cluster = PBSCluster(local_directory=local_dir)
w = cluster.start_workers(10)
from dask.distributed import Client
client = Client(cluster)
Kill jobs once done with computations in a notebook with:
cluster.stop_workers(cluster.jobs)
or in a shell with python kill.py.
Clean up after computations: ./clean.sh