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Update installation instruction and Readme with bioconda details.
apduncan
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Jul 10, 2025
* feat: add pypi deployment to CD (#17) Added building and releasing to PyPI to github actions. * chore: fix build trigger Typo in actions for triggering PyPI build/deploy * 0.5.0 Automatically generated by python-semantic-release * chore: build and push images on version tag Added a github action to build and deploy Docker images to GHCR when a new version tag (i.e. v0.6.0) is pushed. * chore: update actions triggers Update to only trigger image build on version tag push. Update ci-cd to only trigger on updates to src/, test/, docs/. * add a little badge :) * fix(nextflow): correct withName in slurm Corrected the syntax for setting the array size in the withName selector for the slurm profile. Had incorrectly used a colon, which caused errors when attempting to use the slurm profile. * Don't deploy on forks (#18) * Fix CLI rank bounds, address pandas deprecation warnings (#19) * fix(denovo): include upper bound in cli rank select Command line utility 'rank_selection' will now include the upper rank bound in the search (--rank_max 5 would stop at 4 previously). This has been added to unit tests. * chore: address pandas deprecation warnings Resolved several places where pandas operations were raising warnings or FutureWarnings for upcoming changes to behaviour. * chore: silencing of plotnine warnings for saving figures * 0.5.1 Automatically generated by python-semantic-release * docs: update installation (#20) Update installation instruction and Readme with bioconda details. * docs(denovo): warn about NA in univariate_tests Updated univariate_test documentation to warn that if providing a DataFrame to against, NA value will propagate (any columns with NA will have NA test results) --------- Co-authored-by: github-actions <action@github.com> Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
apduncan
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Sep 15, 2025
* update univariate_tests docs (#21) * feat: add pypi deployment to CD (#17) Added building and releasing to PyPI to github actions. * chore: fix build trigger Typo in actions for triggering PyPI build/deploy * 0.5.0 Automatically generated by python-semantic-release * chore: build and push images on version tag Added a github action to build and deploy Docker images to GHCR when a new version tag (i.e. v0.6.0) is pushed. * chore: update actions triggers Update to only trigger image build on version tag push. Update ci-cd to only trigger on updates to src/, test/, docs/. * add a little badge :) * fix(nextflow): correct withName in slurm Corrected the syntax for setting the array size in the withName selector for the slurm profile. Had incorrectly used a colon, which caused errors when attempting to use the slurm profile. * Don't deploy on forks (#18) * Fix CLI rank bounds, address pandas deprecation warnings (#19) * fix(denovo): include upper bound in cli rank select Command line utility 'rank_selection' will now include the upper rank bound in the search (--rank_max 5 would stop at 4 previously). This has been added to unit tests. * chore: address pandas deprecation warnings Resolved several places where pandas operations were raising warnings or FutureWarnings for upcoming changes to behaviour. * chore: silencing of plotnine warnings for saving figures * 0.5.1 Automatically generated by python-semantic-release * docs: update installation (#20) Update installation instruction and Readme with bioconda details. * docs(denovo): warn about NA in univariate_tests Updated univariate_test documentation to warn that if providing a DataFrame to against, NA value will propagate (any columns with NA will have NA test results) --------- Co-authored-by: github-actions <action@github.com> Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com> * docs(denovo): warn about NA in univariate_tests Updated univariate_test documentation to warn that if providing a DataFrame to against, NA value will propagate (any columns with NA will have NA test results) * chore: update actions triggers Update to only trigger image build on version tag push. Update ci-cd to only trigger on updates to src/, test/, docs/. * docs: add logo and abstract to readme * docs: add logo and abstract to readme --------- Co-authored-by: github-actions <action@github.com> Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
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Update installation instructions and Readme with bioconda details.