seaMass-TD is the first method to deconvolute top down proteomics spectra that infers high resolution output on isotopically unresolved input.
See here for more information.
Depends on CMake, HDF5 and Boost. Windows developers can get these from the dependency repository. Also currently requires Intel MKL with the Intel C++ Compiler 14.0 or greater.
Run the cmake.sh or cmake.bat file for your platform, which will create make files for compilation in build/debug and build/release subfolders.